Pseudomonas alvandae: KSS97_10050
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Entry
KSS97_10050 CDS
T07736
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
palv
Pseudomonas alvandae
Brite
KEGG Orthology (KO) [BR:
palv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
palv03032
]
KSS97_10050 (topA)
03400 DNA repair and recombination proteins [BR:
palv03400
]
KSS97_10050 (topA)
Enzymes [BR:
palv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KSS97_10050 (topA)
DNA replication proteins [BR:
palv03032
]
Prokaryotic type
DNA Topoisomerases
KSS97_10050 (topA)
DNA repair and recombination proteins [BR:
palv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KSS97_10050 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QXI55249
LinkDB
All DBs
Position
2244309..2246921
Genome browser
AA seq
870 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
APALSPKDKARKQLVSRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGAT
VRFEVAREKGEAFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVAMARTYIESEFGKKYLPDTPN
VYSSKEGAQEAHEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTV
SVGAGDFELRAKGRILKFDGYTRVMPQITKPGDDDVLPDMAQGDVMKLIKVDPTQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAESPDDGMRANQPVMT
DIPCLTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCAGYEIEEGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVIEILPHKDEIDPKYHFLCDAPQKDPDGRPAVIRYSRKTK
EQYVQTEVDGKPTGWKAYYDGGKWTIEDKR
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtat
ctgggcaaccaatacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaggagcctgccgccaagcgtggcaaggcggccgctggtgaa
gcgccggcgctgtcgccgaaagacaaggcgcgcaagcagctggtctcacgcatgggcgtc
gatccggaacatggctggaaagccaagtacgagatcctcccaggcaaggaaaaggtcatc
gaagaactgcgtcggctcgccaaggatgccgacaccatctatctcgcgacggacttggac
cgcgaaggggaagccattgcctggcacctgcgcgaagccatcggtggggatgacagccgc
tacaagcgcgtggtgttcaacgaaatcaccaagaaggccatccaggaagccttctcccag
cccggcgagctggacatcgatcgggtcaacgcccaacaggcgcgtcgcttccttgaccgc
gtcgtgggctacatggtctcgcccttgttgtgggccaagatcgcccgcggcctgtcggcc
ggtcgcgtgcagtcggttgcggtgaagctggtggtggagcgcgagcgggaaatccgcgcg
ttcattccagaggagtattgggaagtccacgctgatctcggcaccgccaagggcgctacc
gtgcgcttcgaagtggcccgcgagaaaggcgaagccttcaagccgctcaacgaagcccag
gccatggcggcgctggagaaactcaaggcttcgagctacagcatcgtcaagcgcgaagac
aagccgaccagcagcaagccttccgcaccgttcattacttccaccttgcagcaggccgcg
agcaaccgcctgggcttcggtgtgaagaaaaccatgatgatggcccagcgtctgtacgaa
gcgggctacatcacgtacatgcgtaccgactcgaccaacctctcggccgatgccgtggcg
atggcgcgcacttatatagaaagcgagttcggcaagaaatacctgccggacacgccgaac
gtctacagcagcaaggaaggcgcgcaggaggctcacgaagcgattcgtccatccgatgcc
aataccgagccaagcaagctgtcgggcatggagcgcgacgccgagcgtctctacgagctg
atctggcgccagttcctggcctgccagatgctgccagcgcaatacctgtcgaccaccgtc
agcgtcggtgctggcgacttcgagctgcgcgccaaaggccgcatcctgaagttcgacggt
tacacccgcgtcatgccgcaaatcaccaagccaggcgatgacgatgtcctgccggacatg
gcccagggcgacgtgatgaagctgatcaaggtggatccgacgcagcacttcaccaagccg
ccagcacgatactcggaagccagcctggtcaaggaaatggaaaaacgtggcatcggtcgt
ccttcgacctacgctgcgatcatttccaccatccaggatcgcggctacgtgacgttgcac
aaccgtcgtttctattcggaaaagatgggggacatcgttaccgagcgtctctccgaaagc
ttctcgaacctgatggactacggtttcaccgcgggcatggaagagaacctggacgatgtg
gcccagggcgagcgggactggaagaatgtgctcgacgagttctacggcgacttcaagaaa
aaactcgaagtggccgaaagtccggacgatggcatgcgtgccaaccagccggtcatgacc
gatattccgtgcctgacctgcggtcgcccgatgcagatccgtaccgcctcgaccggcgtg
ttcctcggttgctcgggctacagcctgccgccgaaggagcgctgcaaggcgacggtcaac
ctcgtgccgggtgacgaaatcgctgcggacgatgagggtgagtcggaatccctggtcctg
cgcggcaagcaccgttgcccgatctgcagcacggcgatggatgcttacctgttggatgaa
aagcgcaagctgcacatctgcggtaacaatccggattgcgccggctacgagatcgaggag
ggcacttatcgcatcaagggctatgaaggcccgagcctggaatgtgacaagtgcggcagc
gagatgcagctcaagaccggccgtttcggcaagttcttcggttgcaccaacccgacctgc
aagaacacccgcaagctgctcaagagcggtgacgcggcgccgccgaagatggatccggtg
aagatgcccgaactcaagtgcgagaaggtcaacgacacctacatcctgcgcgacggtgca
tccggtctgttcctggccgccagccaattcccgaagaatcgtgagactcgggcaccgttg
gtgattgaaatcctgccgcacaaggacgagatcgatccgaagtatcatttcctctgcgac
gcaccgcagaaggatccggacggccgccccgcagtgattcgctacagccgcaagaccaag
gagcaatatgtgcagaccgaggtcgacggcaagcctactggctggaaggcatattacgac
ggcggtaaatggaccattgaagacaagcgctga
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