Paenibacillus amylolyticus: P9222_30915
Help
Entry
P9222_30915 CDS
T09036
Name
(GenBank) RNA ligase family protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pamy
Paenibacillus amylolyticus
Pathway
pamy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pamy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
P9222_30915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pamy03400
]
P9222_30915
Enzymes [BR:
pamy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
P9222_30915
DNA repair and recombination proteins [BR:
pamy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
P9222_30915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
WFR62535
LinkDB
All DBs
Position
6324538..6325488
Genome browser
AA seq
316 aa
AA seq
DB search
MFKPLIPFEPVSRDTLPTGPQWIAQVKWDGVRMLAYEDGQELRLVNRRLHDRTAQYPELV
TPRNLCSGSSYILDGEVIALDPDTGKPSFYHVLRRDRMSRPEGIAQAIHQIPVTYMVFDI
LFYEGKWVTDQPLADRQRLLHEVLNTAPHVQEVTNTLDAASLLSVMRQHQMEGIVCKDLT
SSYGIQGKDPRWQKLKIMHDVYAMIGGVTYRSGIVNAVAIGVYDGPNFVYIGHVGTGRLN
ADTWRELTQQVQPLITQDRPFHNVPERSAETTWVEPQIGVKVQYMELTHHRTLRHPSIQT
FADVTREDCLANQLLH
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaaccgttgattccgttcgaacccgtctcccgggataccctacccaccggaccg
caatggattgcgcaggtcaagtgggatggagtccgcatgcttgcctatgaggatgggcag
gagcttcgcctggtgaatcgcagattacatgaccgaactgcacaatatcccgaactggtg
acaccacgtaatttgtgctctggttcctcgtatattttggatggcgaagttattgcgttg
gacccggacacgggaaaaccttcgttttatcatgttctgcggcgggatcgcatgagcaga
cccgaaggcatcgcccaagccatacatcagattccggtcacgtatatggtatttgatatc
ctgttctatgaggggaaatgggtgacggatcagcctttggcagatcgacagcgcctgctg
cacgaggtacttaacaccgccccgcatgttcaggaagtcaccaatacactggatgccgct
tccctgctttcagttatgagacagcatcagatggaaggcatcgtctgcaaagatctcacc
agcagttatggcatacagggtaaggacccgcgctggcagaagctcaaaatcatgcatgat
gtatatgccatgatcgggggagtcacctaccggagcggtattgtgaatgctgtcgcgatc
ggtgtatatgatgggcccaattttgtctatattggtcatgtcgggactggcaggctgaac
gccgatacctggcgtgaactcactcaacaagtgcagcctctgatcacgcaggacagaccg
ttccataatgtacccgagcgcagtgcagagaccacctgggtggaaccgcaaataggtgtc
aaagtgcaatatatggaactgacacatcatcgcacactacgccatcccagtatccagacc
ttcgcggatgtaacccgtgaggattgcttggcgaaccagcttcttcattga
DBGET
integrated database retrieval system
