Pantoea sp. At-9b: Pat9b_1405
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Entry
Pat9b_1405 CDS
T01386
Name
(GenBank) excinuclease ABC, C subunit
KO
K03703
excinuclease ABC subunit C
Organism
pao
Pantoea sp. At-9b
Pathway
pao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pat9b_1405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pao03400
]
Pat9b_1405
DNA repair and recombination proteins [BR:
pao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pat9b_1405
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UvrC_RNaseH_dom
GIY-YIG
UVR
HHH_5
HHH
HHH_3
HHH_2
Motif
Other DBs
NCBI-ProteinID:
ADU68726
UniProt:
E6WDA4
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Position
1575327..1577159
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AA seq
610 aa
AA seq
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MSDVFNAKAFLSTVTSQPGVYRMYDATGTVIYVGKAKDLKKRLSSYFRSQVGSRKTEALV
SNIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPYIFLSGDSHPRLAMHRG
AKHAKGEYFGPFPNGYAVRETLALLQKVFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVA
GLVTEEEYAQQTDYVRLFLAGKDDQVLNQLVKRMEAASQALRFEEAARLRDQILAVRRIT
EKQFVSNQGDDLDVMGVAYDAGMACLHVLFIRQGKVLGSRSYFPKVPADTELAEVVQTFL
GQFYLQGSEARTLPTDILLDFSLPERELLAESLSEMAGRKVNIQSKPRGDRARYLKLART
NAATALTTRLSQHSTIQQRLAALATFLELDQINRMECFDISHTMGEQTIASCVVFDRNGP
LRSDYRRYNIEGITPGDDYAAMNQVLLRRYGKALDEEKIPDVILIDGGKGQLAQAKQVFA
ELDVPWDKDRPILLGVAKGSDRKAGLETLFFEAEGEGTSLPPDSPALHVIQHIRDDAHNH
AISGHRKKRAKVKNTSALETIEGVGPKRRQQLLKYMGGLQPLMNASVEEIAKVPGISFAL
AEKIYYSLKH
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgacgttttcaacgctaaagcctttctcagcaccgtgaccagtcagcccggcgtc
tatcgaatgtatgacgcgacaggcacggtgatctatgttggtaaagccaaagacctcaaa
aagcgcctgagcagctattttcgctcgcaggtgggaagtcgcaaaaccgaagcgctggtc
agcaacattcaacaaatcgatgtcacggtgacgcacaccgagacggaagcgctgttgctg
gagcataactacatcaagctgtatcagccgcgttacaacgtgctgttgcgtgatgataaa
tcttatccctatatctttctcagtggcgatagccatccacgattggccatgcatcgtggg
gcgaagcatgccaaaggtgaatacttcggcccatttcccaatggttatgcggtgcgtgaa
acgctggcgctgttgcagaaagtgttcccgattcgccagtgtgaaaacagtgtgtatcgc
aatcgctcgcgtccctgtctgcaatatcaaattggccgttgtctcggtccctgtgttgcc
gggctggtgactgaagaagagtatgcacaacaaaccgactacgtgcggctgttcctggcg
ggcaaagacgatcaggtgctgaatcaactggtcaaacgcatggaagccgccagccaggcg
ttgcggtttgaagaagccgcgcgcttacgtgatcaaattctggcggtgcgtcgtatcacg
gaaaaacagtttgtgtccaatcagggggacgatctggatgtgatgggcgtggcctacgat
gcgggtatggcgtgtctgcatgtcttgtttattcgtcagggcaaagtcctgggtagccgc
agttactttcccaaagtcccggcggacactgagctggccgaagtggtacaaacgttcctc
ggccagttctatttgcaaggcagtgaagcgcgcaccttgccgacagatattttgctggat
ttcagcttgccggagcgcgaattactggcggaatcgctcagcgagatggccgggcgtaaa
gtgaatatccaaagcaagccacgtggtgatcgcgcccgttatcttaaactggcgcgcacc
aatgcggcgacggcactgacgacgcgcttgtcacagcattcgaccattcagcagcgtctg
gcggcactggcgacgttccttgaactggaccagatcaatcggatggaatgctttgacatc
agccataccatgggtgagcaaaccatcgcttcctgcgtggtgttcgatcgcaacggtccg
ttacggagtgattatcgacgctacaacatcgaaggcattacgccgggcgatgattacgcg
gcgatgaatcaggtattacttcggcgctatggtaaagcgctggatgaagagaaaataccg
gatgtgatcctgattgatggcggcaaggggcaactggcgcaggcgaaacaggtgtttgcc
gagctggatgtgccctgggataaagatcgtccgattctgctcggtgtggcgaaaggcagc
gatcgtaaagcagggttagaaacgctgtttttcgaggcggaaggagaggggacatcgtta
ccgccggattcgcctgcgctgcatgtgatccaacatattcgtgatgatgctcacaatcat
gcaatctcgggccatcgtaaaaaaagggctaaagtgaagaacaccagcgccctggaaact
atcgaaggcgtagggccaaaacgacgccaacagctgcttaagtatatgggcggcctgcag
ccgctgatgaatgccagtgtcgaagagattgccaaagtgccgggcatttctttcgcgctg
gcagaaaaaatctactattcccttaaacactaa
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