Pseudoalteromonas arctica: PARC_a0910
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Entry
PARC_a0910 CDS
T05179
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
part
Pseudoalteromonas arctica
Pathway
part03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
part00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PARC_a0910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
part03019
]
PARC_a0910
Enzymes [BR:
part01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PARC_a0910
Messenger RNA biogenesis [BR:
part03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PARC_a0910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ATC85591
UniProt:
A0A290S3M3
LinkDB
All DBs
Position
I:881584..882831
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AA seq
415 aa
AA seq
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MSATTFSSLNLDPLLLTAIEQNNYTQPTAIQIKTIPPILAGSDVMGSAQTGTGKTAAFVL
PLLHKLLNTPKKDEQGLARVVILTPTRELAQQVFASFEKYAQGTNINGALAYGGVSIGPQ
IKALKTAQVIVATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIRRILRHIPG
DRQTLLFSATFDDSVFELSKKLLKNPELIEVDKRNSAAVEVEQVIYAVDEDRKRELVSHM
IGMKNWRQVLIFTRTKQMADQLAKEMCKDGLKTESIHGDKSQGARDRALQNFKEGITRVL
VATDVAARGLDISTLRYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSLDEQWLLEE
IEVLLDTRLTPQWLEGYEPDPNKKPKDNRKNTNKSRKDRDKKRITGKREPSRRRK
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccactacgttctcatcacttaatctcgacccgttattattaacagcgattgag
caaaataattacactcaacctaccgcaattcagattaaaactattccgcctattttagcc
ggaagtgatgtaatgggcagcgcgcaaacaggtacgggtaaaaccgccgcctttgtttta
cctttattacataagcttttaaatacccctaaaaaagatgagcaaggccttgcccgcgtt
gtaattttaacgccaacccgtgagcttgctcagcaagtatttgcaagctttgaaaagtac
gcacaaggcactaatatcaatggcgctttagcctatggtggcgtaagtattggccctcaa
ataaaagcacttaaaacagcgcaagttatagtggcaacacctgggcgtttgcttgatcat
atagttaaaggcagtgtggtactttcaagcgtagactccttagtgtttgacgaagctgac
cgcatgcttgatatgggctttattgatgaaattagacgtatattgcgacatatcccgggc
gatcgccaaactttactattttcagctacgtttgatgacagcgtgtttgaactcagtaaa
aagttacttaaaaacccagaactaattgaagttgataagcgcaactcagcagccgttgaa
gtagagcaagttatttacgctgtagatgaggatcgtaagcgcgaacttgtatcgcacatg
attggcatgaaaaactggcgccaagtgcttatttttactcgcacaaaacaaatggctgat
cagcttgctaaagaaatgtgtaaagatggtttaaaaaccgaatcaatccatggcgacaaa
tcgcaaggcgcacgcgaccgtgcattgcaaaactttaaagaaggtattacacgcgtactt
gttgcaaccgatgtagctgcgcgtggtttagatatttctacacttagatacgtaattaac
tttgaactaccgtacattgccgaggattacgtgcaccgtattggccgtacaggtcgagct
ggtgaacaaggacttgctatgtcgctggtaagtcttgatgagcaatggctgctagaagaa
attgaagtactactcgatacgcgtttaacgccgcagtggttagaaggttacgagccagat
cctaataaaaagccaaaagataatcgtaaaaatactaacaagtcgcgaaaagatcgcgat
aaaaaacgcatcactggtaaaagagagccaagcagacgtcgtaaataa
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