Pseudoalteromonas arctica: PARC_a3336
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Entry
PARC_a3336 CDS
T05179
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
part
Pseudoalteromonas arctica
Pathway
part03410
Base excision repair
part03430
Mismatch repair
part03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
part00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PARC_a3336 (recJ)
03430 Mismatch repair
PARC_a3336 (recJ)
03440 Homologous recombination
PARC_a3336 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
part03400
]
PARC_a3336 (recJ)
DNA repair and recombination proteins [BR:
part03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PARC_a3336 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PARC_a3336 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PARC_a3336 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
RecJ_OB
DHH
Glyco_transf_4
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
ATC87728
UniProt:
A0A290S6E9
LinkDB
All DBs
Position
I:complement(3263715..3265436)
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AA seq
573 aa
AA seq
DB search
MKKLIIARENVDDSHLPSNLHPVIKQIYANRNVFNAEELNNSVATLHDFKLFKDIDKASD
LLIEALKAQSQILIVGDFDADGATSTATLMQGLEMFGFKHLDYLIPDRFSLGYGLSPALA
EQIVQIKPDLVITVDNGISCIAGIDILKAVGIKVLVTDHHLQGEQLPNADAIVNPNRHEC
DFPSKSIAGVGVAFYLLIALRSVMRDLGYFEQQPPPNLANLLDIVALGTVADVVALDANN
RTLVHQGLARIRSGKTRPGITALIEVANRNAARLSASDFGFSLAPRLNAAGRLDDMSLGI
ACLLSTDINQARSIAGELDSLNFARREIEQGMQAEAQAVLDRLAFSDDNIPDAICLFQDD
WHQGVIGILAGRLKEKYHRPTVIFAGGENGEIKGSCRSIEGLHMRDLLEGLNTADPHLIN
KFGGHAMAAGLSINEQHFNDFKKAFDAAVSAQLSEESKRCIVFTDGELPNDCFTMEFAQL
LKQSGPWGQQFPEPVFEHTFEVIQQRIVGEKHLKLVLKHQSGRLVDAIAFGIDVKEWPDT
EAKFVKVAYQLDINEFRGKFTLQLIVRELEKVH
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaactaatcattgcgcgtgaaaacgttgacgactcgcatctgccgagtaattta
caccctgtaattaaacaaatttatgctaaccgcaatgtattcaatgccgaagagctaaat
aacagcgtagctacgcttcacgacttcaaattgtttaaagacatcgacaaagccagcgac
ttattaattgaagcattaaaagcgcaaagccaaatattaatagttggcgactttgatgcc
gatggcgcaacaagcactgcaacattaatgcaaggccttgagatgtttggctttaaacat
ttagattacttaattcctgacaggtttagcttaggatatggcttaagccccgcgcttgct
gagcaaatagtacaaataaaacctgatttagtgatcaccgtagataacggcatatcgtgt
attgccggtattgatattttaaaagcggttggcataaaagtgctggtaacagatcaccac
ttacaaggtgagcagctgccaaatgcagatgcaatcgtaaatccaaataggcacgaatgt
gattttccgtctaaatctattgcaggcgttggcgttgctttttacttattaatagcgctg
agaagcgtaatgcgagatttgggttattttgagcaacaaccaccgcctaatttagctaac
ttgctcgacattgtagcgcttggcacggttgccgatgtagtggcacttgatgcaaataac
cgtaccttagtacaccaaggtttagcacgtattcgcagtggtaaaacacgcccaggcatt
accgcgcttattgaagtggctaaccgcaatgctgcccgcttaagcgcaagcgactttggc
ttttcacttgcgccgcgtttaaatgcagcagggcgattggacgacatgagtttgggtata
gcgtgcttgcttagcaccgacataaaccaagcgcgtagtatagccggcgagctcgatagc
ttaaactttgcaaggcgcgaaatagaacaaggtatgcaagccgaggcgcaagccgtgctt
gataggctcgcatttagcgatgataacattcctgatgctatttgtttgtttcaagacgat
tggcatcaaggtgttattgggattttggctggtcgcttaaaagaaaaataccaccgtcca
accgttatattcgctggtggcgaaaacggtgagattaaaggctcgtgccgctctattgaa
gggctgcacatgcgcgatttactagaagggcttaatacagccgacccacacttaattaat
aaatttggtggccacgccatggcagccggcttaagtatcaacgagcaacactttaacgac
tttaaaaaagcgtttgatgccgcagttagcgcgcaactgagtgaagaaagtaaacgctgt
attgtatttaccgacggcgagctgccaaacgactgctttacgatggaatttgcccagcta
ttaaagcaatcgggcccgtggggtcagcaatttcctgagccggtgtttgagcataccttt
gaagtaatacagcagcgcatagtaggcgaaaagcatttaaagctcgtgttaaagcatcaa
tctggtcgtttagttgatgccattgcttttggtattgatgtaaaagaatggccagatact
gaggcgaagtttgtaaaagtagcgtaccagctcgatataaatgagtttagaggtaaattt
acgctgcaattaatagttagagagcttgaaaaagtacactaa
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