Pseudomonas asgharzadehiana: KSS96_08410
Help
Entry
KSS96_08410 CDS
T07697
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pasg
Pseudomonas asgharzadehiana
Brite
KEGG Orthology (KO) [BR:
pasg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pasg03032
]
KSS96_08410 (topA)
03400 DNA repair and recombination proteins [BR:
pasg03400
]
KSS96_08410 (topA)
Enzymes [BR:
pasg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KSS96_08410 (topA)
DNA replication proteins [BR:
pasg03032
]
Prokaryotic type
DNA Topoisomerases
KSS96_08410 (topA)
DNA repair and recombination proteins [BR:
pasg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KSS96_08410 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QXH68941
LinkDB
All DBs
Position
1818914..1821535
Genome browser
AA seq
873 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNEYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
GPVLTPKEKARKQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSKPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGAN
VRFEVAREKGEAFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVAMARTYIESEFGKKYLPEKPN
VYSSKEGAQEAHEAIRPSDANTTPAKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTV
SVGAGDFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDTLKLIKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAESPDSGMRANQPVMT
DIPCQTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKHKLHICGNNPDCNGYEIEEGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVLEIVPHKDEIDPKYHFLCEAPKKDPDGRPAVIRYSRKTK
EQYVQTEVDGKPTGWKAFYDGGKWKVEDKRQGA
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtac
ttgggcaacgagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaggagcctgccgccaagcgcggcaaggcggctgcgggtgaa
ggtccggtactcacgccaaaagagaaagcgcgcaagcaactggtctcgcgcatgggtgtg
gacccggatcatggctggaaggccaagtacgaaatccttccgggcaaggaaaaggtcatc
gaagagctgcgccggctcgccaaagatgccgacaccatctatctcgcaacggacttggac
cgcgaaggggaagccattgcctggcacctgcgcgaagccattggcggggatgacagccgc
tataaacgcgtggtgtttaacgaaatcaccaaaaaagccatccaggaagccttctccaag
ccgggcgagttggatatcgaccgcgtcaacgcccagcaggcgcgacgttttctcgaccgc
gtcgtgggctacatggtctcgccgctgctgtgggccaagatcgctcgtggcctgtccgcc
ggtcgtgtgcaatcggtagcagtcaagctggtggtggagcgcgaacgtgagattcgtgcg
ttcaaccccgaagagtactgggaagtccacgctgacctcggcaccgccaagggcgccaac
gtgcgctttgaagtggcccgcgagaaaggcgaggccttcaagccgctgaacgaagcccag
gccatggccgcgctggaaaagctcaaggcatccagttacagcatcgtcaagcgtgaagac
aaaccgaccagcagcaagccgtcggcgccgttcatcacctccaccctgcaacaggccgcg
agtaaccgcctgggcttcggtgtgaagaaaaccatgatgatggcccagcgtctgtacgaa
gccggctacatcacgtacatgcgtaccgactccaccaacctgtcgcaagacgcggtggcg
atggcgcgcacctatattgaaagcgaattcggcaagaagtacctgccggagaagccaaac
gtctacagcagcaaggaaggcgcccaggaggctcacgaagcgattcgtccttccgacgcc
aacaccacgccggcaaagctgagcggcatggagcgtgatgctgagcgcctctatgagctg
atctggcgccagttcctggcttgccagatgctgccggcgcaatacctgtccaccaccgtg
agcgtgggcgccggcgacttcgagctgcgtgccaagggccgtatcctcaagttcgacggc
tatacccgtgtgatgccgcaaatcgccaaaccgggcgatgacgatgtgctaccggacatg
gcccagggcgacacgttgaagctgatcaagctcgatccgtcgcagcacttcaccaagccg
ccggcgcgttactcggaagccagcctggtcaaggaaatggaaaaacgcggtatcggtcgt
ccttcgacctacgcggccatcatttccaccatccaggaccgtggctacgtggcgctgcac
aaccgtcggttctattcggaaaagatgggtgacatcgtcaccgagcgtctgtccgagagt
ttctccaacctgatggactacggcttcaccgccggcatggaagagaacctcgatgacgtg
gcccagggcgagcgtgactggaaaaacgtgctggacgagttctacggcgacttcaaaaag
aaactcgaagtggccgaaagccctgacagcggcatgcgtgccaaccagccggtgatgacc
gacatcccgtgccagacctgcggccgcccgatgcagattcgtaccgcatccaccggtgtg
ttcctcggttgctcgggctacagcctgccgccaaaagagcgctgcaaggccacggtcaac
ctggtgccgggtgatgaaatcgctgccgatgacgaaggtgaatccgagtcgctggtattg
cgtggcaagcaccgttgcccgatctgcagcacggcgatggatgcctacctgctcgacgag
aagcacaagttgcatatctgcggtaacaacccggattgcaacggctacgagattgaagag
ggcacttatcgcatcaagggctacgaaggtccgagcctggaatgcgacaagtgcggcagc
gagatgcagctcaagaccggccgtttcggcaagttcttcggctgcaccaacccgacctgc
aagaacacccgcaaactgctcaaaagcggtgacgcagcgccgccgaagatggacccggtg
aagatgcctgaactcaagtgcgagaaggtcaacgacacctacatcctgcgtgacggtgcc
tcggggttgttcctggctgccagccagttcccgaaaaaccgcgagacccgtgcaccgctg
gtgttggagatcgtgccgcacaaggatgagatcgatccgaagtaccacttcctgtgtgaa
gcgccgaagaaggatccggatggtcgtccagccgtgatccgctacagccgtaaaaccaag
gagcagtacgtgcagaccgaagtggacggtaagcctaccggctggaaagcgttctacgac
ggtggcaagtggaaagtcgaggacaagcgccagggcgcttga
DBGET
integrated database retrieval system
