KEGG   Pseudomonas asturiensis: N015_10840
Entry
N015_10840        CDS       T08470                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
past  Pseudomonas asturiensis
Pathway
past03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:past00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    N015_10840 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:past03400]
    N015_10840 (ligD)
Enzymes [BR:past01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     N015_10840 (ligD)
DNA repair and recombination proteins [BR:past03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     N015_10840 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: QHF02882
UniProt: A0AA92F9R5
LinkDB
Position
2417085..2419682
AA seq 865 aa
MSKPVSEYMRKRNFGITSEPAEAAGKKRRAKNHALSFVIQKHDARNLHYDFRLELDGTLK
SWAVPKGPSLDPTQKRLAVHVEDHPLDYASFEGSIAKGQYGGGDVIVWDRGVWEPHGDPR
KTYEEGKLKFTLIGEKLTGEWALIRTRLKGSGSKQQWLLIKEKDAIARPADEYDITEQQP
LSVISGAQVGVGRGTATNAKARSTKTDAPSASAKKSRARTKSGLPESLPPQLATLVDAPP
AGEWLYEIKFDGYRILTRIQGDDVRLFTRNGHDWTDRLPELAKAIKALKLQDTWFDGEVV
VLNDEGLPDFQALQNAFETGRSKGILYYLFDMPYLSGEDLREVPVEQRRDALGQVLGKQR
SRLLRFSDAFRSGHKDIIESASAMGLEGVIGKRAGSPYVGKRNADWIKLKCRLRQEFVIV
GYTAPQGSRSGFGALLVAVNDDNGLVYAGRIGTGFNDLTLKKLHEQLQPLARETSPLDKQ
LTSAQGRGVHWVEPQLICEAEFAEWTREGILRQAAFVGVRNDKSAGEVVREYPQPAQVAS
RRKTGKPGKAKPADSHVASRSARGKVTVAGVGISHPDRVIDSKTGTQKIELAQFYEAMGE
WILPYLHKRPVALLRCPEGIEGEQFFQKHAERLAIPHIRQLDRKLDPGHAALMEIDTVQA
LVGATQMGAIELHTWGATRDRIETPDHLVLDLDPDPALPWRSMLEATQMVLAVLDELGLD
AFLKTSGGKGMHIIVPLARHADWETVKGFAKAIAEFVTRQLPERFTATMGPKNRVGRIFV
DYLRNSRGSSTVTAYSVRARPGLPVSVPIALDELPELTSSAQWDITNLEQRLRQLKHDPW
AGYSNRQRITRTMWKQLGATRPQDA
NT seq 2598 nt   +upstreamnt  +downstreamnt
atgtccaagcctgtcagcgagtacatgcgcaaacgcaatttcgggatcacctcggagcct
gccgaggctgcgggcaagaagcgcagagcaaagaatcatgcgttgagcttcgtcattcag
aagcacgacgcgcgaaaccttcattacgactttcgccttgagctggacggtacgctcaag
agctgggcagtgccgaaagggccgagccttgaccccactcaaaaacggctggcagtgcat
gtcgaggatcatccgctggattacgccagcttcgagggcagcattgcgaaaggacagtac
ggtggcggcgacgtgatcgtctgggatcgcggggtctgggaaccccatggtgatccgcgc
aaaacgtacgaggagggcaagcttaaattcaccctgatcggggaaaaactgaccggtgaa
tgggcgctgatccgcacccggctcaaaggcagcggcagcaagcaacagtggctgttgatc
aaggaaaaggacgcgattgcccggcctgccgacgaatacgacattaccgagcaacaaccg
ctgagtgtgatcagcggagcgcaggtcggcgtcgggcgaggtacggcgaccaatgccaag
gctcgctcgacgaagactgacgcaccttctgcgtcagcgaaaaagtcccgtgccaggaca
aaaagcggtctccccgaatcattgcccccgcaactcgccacgctggtggacgcaccgcct
gctggcgagtggctgtacgaaatcaagttcgacggctaccgcattttgacgcgcattcag
ggcgatgacgtgcggctgttcacgcgcaacggccacgactggactgatcgattgcccgaa
ctggccaaggcgatcaaggccctgaaactgcaggacacctggtttgatggcgaagtcgtt
gtgctcaatgatgaaggcttgccggactttcaggcattgcagaatgcgtttgagaccggg
cgcagcaagggcattctctactacctgttcgacatgccctatctgagcggcgaagacctg
cgcgaggtgcccgtcgagcagcgtcgtgatgcgctggggcaagtgctcggcaaacaacgc
agccgcctgctgcgattttccgatgcctttcgctcggggcataaggacatcatcgaaagc
gccagcgcgatgggccttgaaggggtgatcggcaagcgtgccggcagtccctatgtcggc
aagcgcaacgccgactggatcaagctcaaatgccgattgcgccaggagttcgtgatcgtt
ggctacaccgcgccgcaaggcagtcgctcgggattcggggcgttattggtggcggtcaac
gacgacaacggcctggtttacgctggacggatcggtaccggtttcaacgacctgaccctc
aaaaaactgcatgagcagttgcaaccgctggcgcgtgaaacttcgccgctggacaagcag
ctcacctcggcgcaaggacgtggcgtgcactgggtagagccacagttgatctgcgaggca
gagttcgccgagtggacacgtgaggggatcttgcgtcaggccgcgttcgtcggtgtgcgc
aacgacaagtccgcaggtgaagtggtgcgtgaatacccgcagcctgcgcaggttgccagt
cgccgcaagactggtaagccgggaaaagcgaagcctgccgatagccatgtagcgtccaga
tcggcgcgaggcaaagtcactgtggcaggtgtgggcatcagccatcccgatagggtgatt
gacagcaagacaggcacgcaaaagatcgagctggcgcaattctatgaagcaatgggtgaa
tggattctgccgtatctgcataaacgtccggtggcactgctgcgctgtcccgaggggatc
gaaggcgagcagttctttcagaagcatgccgagcgcctggcgattccccacatccgccaa
ctggaccgcaagctcgacccgggtcatgccgcgttgatggaaatcgacaccgttcaggcg
ctggtcggagcaacacaaatgggggctattgaactgcacacctggggtgccactcgcgat
cgaatcgaaacccccgaccatctggtgctggaccttgatcccgacccggcgctgccctgg
cgcagcatgctcgaagcgacgcaaatggtgctggcggtactggacgagctgggccttgat
gcgtttttgaaaaccagcggcgggaagggcatgcacatcattgtgccgctcgctcgccat
gccgactgggagacggtcaaaggttttgccaaggccatcgccgaattcgtgacccgacaa
ttgcccgaacgctttacggccaccatgggcccgaaaaaccgggttggccgcatctttgtc
gattacctgcgcaacagtcgcggcagcagcacagtcaccgcctattcggtgcgcgcccgg
cccggattaccggtgtcggtgccgattgcgcttgatgaactgccggagcttacgtcatca
gcccagtgggacatcactaaccttgaacagcgcttgcgtcagttgaaacacgacccgtgg
gccggttacagcaaccggcagagaatcacccgcaccatgtggaagcagttgggggcgacg
aggcctcaggacgcctga

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