Pseudomonas asturiensis: N015_10840
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Entry
N015_10840 CDS
T08470
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
past
Pseudomonas asturiensis
Pathway
past03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
past00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
N015_10840 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
past03400
]
N015_10840 (ligD)
Enzymes [BR:
past01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
N015_10840 (ligD)
DNA repair and recombination proteins [BR:
past03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
N015_10840 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QHF02882
UniProt:
A0AA92F9R5
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All DBs
Position
2417085..2419682
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AA seq
865 aa
AA seq
DB search
MSKPVSEYMRKRNFGITSEPAEAAGKKRRAKNHALSFVIQKHDARNLHYDFRLELDGTLK
SWAVPKGPSLDPTQKRLAVHVEDHPLDYASFEGSIAKGQYGGGDVIVWDRGVWEPHGDPR
KTYEEGKLKFTLIGEKLTGEWALIRTRLKGSGSKQQWLLIKEKDAIARPADEYDITEQQP
LSVISGAQVGVGRGTATNAKARSTKTDAPSASAKKSRARTKSGLPESLPPQLATLVDAPP
AGEWLYEIKFDGYRILTRIQGDDVRLFTRNGHDWTDRLPELAKAIKALKLQDTWFDGEVV
VLNDEGLPDFQALQNAFETGRSKGILYYLFDMPYLSGEDLREVPVEQRRDALGQVLGKQR
SRLLRFSDAFRSGHKDIIESASAMGLEGVIGKRAGSPYVGKRNADWIKLKCRLRQEFVIV
GYTAPQGSRSGFGALLVAVNDDNGLVYAGRIGTGFNDLTLKKLHEQLQPLARETSPLDKQ
LTSAQGRGVHWVEPQLICEAEFAEWTREGILRQAAFVGVRNDKSAGEVVREYPQPAQVAS
RRKTGKPGKAKPADSHVASRSARGKVTVAGVGISHPDRVIDSKTGTQKIELAQFYEAMGE
WILPYLHKRPVALLRCPEGIEGEQFFQKHAERLAIPHIRQLDRKLDPGHAALMEIDTVQA
LVGATQMGAIELHTWGATRDRIETPDHLVLDLDPDPALPWRSMLEATQMVLAVLDELGLD
AFLKTSGGKGMHIIVPLARHADWETVKGFAKAIAEFVTRQLPERFTATMGPKNRVGRIFV
DYLRNSRGSSTVTAYSVRARPGLPVSVPIALDELPELTSSAQWDITNLEQRLRQLKHDPW
AGYSNRQRITRTMWKQLGATRPQDA
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagcctgtcagcgagtacatgcgcaaacgcaatttcgggatcacctcggagcct
gccgaggctgcgggcaagaagcgcagagcaaagaatcatgcgttgagcttcgtcattcag
aagcacgacgcgcgaaaccttcattacgactttcgccttgagctggacggtacgctcaag
agctgggcagtgccgaaagggccgagccttgaccccactcaaaaacggctggcagtgcat
gtcgaggatcatccgctggattacgccagcttcgagggcagcattgcgaaaggacagtac
ggtggcggcgacgtgatcgtctgggatcgcggggtctgggaaccccatggtgatccgcgc
aaaacgtacgaggagggcaagcttaaattcaccctgatcggggaaaaactgaccggtgaa
tgggcgctgatccgcacccggctcaaaggcagcggcagcaagcaacagtggctgttgatc
aaggaaaaggacgcgattgcccggcctgccgacgaatacgacattaccgagcaacaaccg
ctgagtgtgatcagcggagcgcaggtcggcgtcgggcgaggtacggcgaccaatgccaag
gctcgctcgacgaagactgacgcaccttctgcgtcagcgaaaaagtcccgtgccaggaca
aaaagcggtctccccgaatcattgcccccgcaactcgccacgctggtggacgcaccgcct
gctggcgagtggctgtacgaaatcaagttcgacggctaccgcattttgacgcgcattcag
ggcgatgacgtgcggctgttcacgcgcaacggccacgactggactgatcgattgcccgaa
ctggccaaggcgatcaaggccctgaaactgcaggacacctggtttgatggcgaagtcgtt
gtgctcaatgatgaaggcttgccggactttcaggcattgcagaatgcgtttgagaccggg
cgcagcaagggcattctctactacctgttcgacatgccctatctgagcggcgaagacctg
cgcgaggtgcccgtcgagcagcgtcgtgatgcgctggggcaagtgctcggcaaacaacgc
agccgcctgctgcgattttccgatgcctttcgctcggggcataaggacatcatcgaaagc
gccagcgcgatgggccttgaaggggtgatcggcaagcgtgccggcagtccctatgtcggc
aagcgcaacgccgactggatcaagctcaaatgccgattgcgccaggagttcgtgatcgtt
ggctacaccgcgccgcaaggcagtcgctcgggattcggggcgttattggtggcggtcaac
gacgacaacggcctggtttacgctggacggatcggtaccggtttcaacgacctgaccctc
aaaaaactgcatgagcagttgcaaccgctggcgcgtgaaacttcgccgctggacaagcag
ctcacctcggcgcaaggacgtggcgtgcactgggtagagccacagttgatctgcgaggca
gagttcgccgagtggacacgtgaggggatcttgcgtcaggccgcgttcgtcggtgtgcgc
aacgacaagtccgcaggtgaagtggtgcgtgaatacccgcagcctgcgcaggttgccagt
cgccgcaagactggtaagccgggaaaagcgaagcctgccgatagccatgtagcgtccaga
tcggcgcgaggcaaagtcactgtggcaggtgtgggcatcagccatcccgatagggtgatt
gacagcaagacaggcacgcaaaagatcgagctggcgcaattctatgaagcaatgggtgaa
tggattctgccgtatctgcataaacgtccggtggcactgctgcgctgtcccgaggggatc
gaaggcgagcagttctttcagaagcatgccgagcgcctggcgattccccacatccgccaa
ctggaccgcaagctcgacccgggtcatgccgcgttgatggaaatcgacaccgttcaggcg
ctggtcggagcaacacaaatgggggctattgaactgcacacctggggtgccactcgcgat
cgaatcgaaacccccgaccatctggtgctggaccttgatcccgacccggcgctgccctgg
cgcagcatgctcgaagcgacgcaaatggtgctggcggtactggacgagctgggccttgat
gcgtttttgaaaaccagcggcgggaagggcatgcacatcattgtgccgctcgctcgccat
gccgactgggagacggtcaaaggttttgccaaggccatcgccgaattcgtgacccgacaa
ttgcccgaacgctttacggccaccatgggcccgaaaaaccgggttggccgcatctttgtc
gattacctgcgcaacagtcgcggcagcagcacagtcaccgcctattcggtgcgcgcccgg
cccggattaccggtgtcggtgccgattgcgcttgatgaactgccggagcttacgtcatca
gcccagtgggacatcactaaccttgaacagcgcttgcgtcagttgaaacacgacccgtgg
gccggttacagcaaccggcagagaatcacccgcaccatgtggaagcagttgggggcgacg
aggcctcaggacgcctga
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