Pseudomonas asturiensis: N015_17490
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Entry
N015_17490 CDS
T08470
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
past
Pseudomonas asturiensis
Pathway
past03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
past00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N015_17490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
past03400
]
N015_17490
Enzymes [BR:
past01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N015_17490
DNA repair and recombination proteins [BR:
past03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
N015_17490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QHF04103
UniProt:
A0AA92IV36
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All DBs
Position
3952398..3955850
Genome browser
AA seq
1150 aa
AA seq
DB search
MPVLRLPPLSAAAGKHHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKF
FAPTLAVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEAMRSRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKVPY
RIDLFDDEIETLRTFDPDTQRSIEKVESVRLLPAREFPLKKEEVTRFKARFRERFDVDFR
RSPILQDLSSGITPAGIEYYIPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWKDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDIDAGGDRARFPGQSLPDL
AIEAKATQPLAALSKFLDEFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWLDFVGG
KDRLAITIAPLDEGLLLEDPALALVAESPLFGQRVMQRRRREKRTDGGNNDAVIKNLTEL
REGAPVVHIDHGVGRYLGLATLEVENQVAEFLMLAYAEDAKLYVPVANLHLIARYTGSDD
EMAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGF
PFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVP
TTLLAQQHYNSFRDRFADWPVTVEVMSRFKSTKEVSAAVADLAEGKIDIVIGTHKLLQDD
VKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIA
TPPARRLSVRTFVMEQNKPTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEAR
IGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPPRKQVTRDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGE
LLGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEAYL
PDVHTRLILYKRIANAADEDGLKDLQVEMIDRFGLLPEPTKSLVRITQLKLRAEQLGIRK
IDAGPQGGRIEFAAETPVDPLTLIKLIQSQPNRYKFEGATLFKFMVPMERADERFNTIEA
LLERLTPTTA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
gtgccagttctgcgtctaccgcctctctctgccgctgcaggcaaacaccactggggcaat
cttcccggtgccgcactgagcctggcgatcgccgaggcggccagcgccgccaagcgcttt
accctgcttctgaccgccgacagccaaagcgccgagcggctggaacaggagctgaagttc
ttcgcgcctacgctggccgtactgcacttccccgactgggaaaccctgccttacgatctg
ttctcgccgcatcaggacattatttcccagcgcatcgcgagtctttatcgcctgccggag
ctggagcatggcgttctggtagtaccgatcaccaccgccctacatagactcgcgccgacc
aaattcctgctgggcagtagcctggtgctggacgtcggccagaagctcgatgtcgaagcc
atgcgtagccgcctggaagccagcggttatcgctacgtggatacggtgtacgaacacggc
gagttcaccgtgcgcggcgcgctgatcgatctgttcccgatgggcagcaaggtgccttac
cgcatcgacctgttcgacgacgaaatcgaaaccctgcgcaccttcgacccggacacgcag
cgctccatcgagaaggtcgagtcggtacgtttgctgcctgcacgcgaatttccactgaag
aaagaagaagtgacgcgcttcaaggcgcgctttcgtgagcgcttcgacgtggacttccgg
cgaagcccgatcctccaggacctgagcagcggcatcacccctgccggtatcgagtactac
atcccgctgttcttcgaggaaacctcgaccctgttcgactacttgccgcaggacactcag
gtgttttcgctgccgggtatcgagcaggccgcagagaacttctggaaagacgtacgcaat
cgttacgaagagcgccgcgtcgacccgtcgcgtccgttgctgccaccggccgaactgttc
ctgccggtcgaagactgcttcgctcggctgaagaactggcctcgcgtcgtcgccagccag
caggacatcgacgccggtggcgaccgcgcgcgcttccctgggcaaagcctgccggacctg
gctatcgaggccaaagcgacccagccgctggctgcgctgtcaaaattcctcgatgaattc
cccggccgcgtgctgtttaccgccgagtcggcgggtcgacgggaagtcctgctcgaactg
ctggagcgcctcaagctgcggccaaaaacggtcgacagttggctcgacttcgtgggcggc
aaggaccggctggcgattaccatcgcgccactggacgaaggcctgctgctggaagacccg
gccctggcactggttgccgagagtccgctgttcggtcaacgcgtcatgcagcgtcgccgc
cgcgagaaacgcaccgatggcggcaacaatgatgcggtcatcaagaacctgaccgaactg
cgcgaaggcgcgccggtagtccacatcgaccacggtgtcgggcgctacctgggcctggcc
acgcttgaggtcgagaatcaggtcgctgaattcctgatgctggcttacgccgaggacgcc
aagctgtacgtcccggtcgccaacctgcacctgattgcccgctacaccggcagcgacgac
gaaatggcgccgctccaccgcctgggttcggaaacctggcagaaagccaagcgcaaggcc
gccgagcaagtgcgcgacgtggccgccgaactgctggacatttacgcgcgtcgtgccgcc
cgggaaggctatgcattcgccgacccgaaagccgattacgccaccttcagcgcgggcttc
ccgttcgaagaaacgccggatcagcagaccaccatcgaagccgtgcgcgccgacatgctg
gcacccaagccgatggatcgactggtctgcggcgacgtgggtttcggcaagacagaagtt
gccatgcgcgctgcattcattgccgtgcacggcgggcgtcaggtcgcgattctggtcccg
accaccctgctcgcccagcagcactacaacagtttccgcgaccgttttgccgactggccg
gtgacggtcgaggtgatgagccgcttcaagtccaccaaggaagtcagcgccgccgtcgcc
gatctggccgaaggcaagatcgacatcgtcatcggcacgcacaagctgctgcaggacgac
gtgaagatcaagaatctggggctggtcatcatcgatgaagagcaccgtttcggcgtgcgt
cagaaagaacagctcaaggccctgcgcagtgaagtcgacatcctgaccctgaccgcaacg
ccgattccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgcc
acgccgccggcacgcaggctgtcggtgcgcaccttcgtcatggagcagaacaagcccacg
atcaaggaagcgctgctgcgcgaattgctgcgcggcgggcaggtctactacctgcacaac
gatgtcaaaaccatcgaaaaatgcgccgccgacctcgccgaactggtgcccgaagcccgt
atcggcattggtcacggccagatgcgcgagcgcgaactcgaacaggtgatgagcgatttc
taccacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtg
ccgagtgccaacaccatcatcatcgagcgtgccgacaagttcggcctggcgcaactgcac
cagttgcgcggccgcgtcgggcgcagtcaccaccaggcgtatgcctatctgctgacgcca
ccgcgcaagcaagtcacccgcgatgccgagaagcgtctggaagccatcgccaacacccag
gacctgggcgcaggcttcgtgcttgccaccaacgacctggaaatccgtggcgcaggcgaa
ctgctgggcgatggccagagcggccagatccaggccgttggcttcacgctgtacatggaa
atgctcgaacgcgcggtgaagtcgattcgtaagggcgaacagcccaacctcgaccagcca
ctgggcggcggaccggaaatcaacttgcgcgtgcctgcactgatccccgaggcctatctg
ccggatgtgcacacccgcctgatcctctacaaacgcattgccaatgctgccgacgaggat
ggcttaaaggacctgcaagtcgagatgatcgaccgtttcggcctgctgccggaaccgacc
aagtcgctggtgcgaatcacgcaactcaaattgcgcgccgagcaactgggcatacgcaag
atcgacgccgggccgcagggtgggcgcatcgaatttgccgccgaaacaccggttgatccg
ctgaccctgatcaaactgatccagagccagcccaatcgctacaagttcgaaggtgccacg
ctgttcaaattcatggtgcccatggaacgcgcagatgagcgtttcaacacgatcgaagcg
ctgcttgagcgcctgaccccgacaactgcttga
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