Pseudonocardia autotrophica: Pdca_52880
Help
Entry
Pdca_52880 CDS
T06156
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
paut
Pseudonocardia autotrophica
Pathway
paut00521
Streptomycin biosynthesis
paut00523
Polyketide sugar unit biosynthesis
paut00525
Acarbose and validamycin biosynthesis
paut00541
O-Antigen nucleotide sugar biosynthesis
paut01100
Metabolic pathways
paut01110
Biosynthesis of secondary metabolites
paut01250
Biosynthesis of nucleotide sugars
Module
paut_M00793
dTDP-L-rhamnose biosynthesis
Brite
KEGG Orthology (KO) [BR:
paut00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 O-Antigen nucleotide sugar biosynthesis
Pdca_52880 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
Pdca_52880 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
Pdca_52880 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
Pdca_52880 (rfbB)
00525 Acarbose and validamycin biosynthesis
Pdca_52880 (rfbB)
Enzymes [BR:
paut01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
Pdca_52880 (rfbB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
Polysacc_synt_2
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
NAD_binding_10
NmrA
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
BBG04079
LinkDB
All DBs
Position
complement(5581269..5582240)
Genome browser
AA seq
323 aa
AA seq
DB search
MQVVVTGGAGFIGSHLVRTVLADRHPSLAGAEVVVLDAFTYAGRIENLAPVRDSPRLRIE
HADIRDPARVREVLTGADLVLHLAAETHVDRSIAGAADFVTTNVVGTQVLLQAALDLGVG
RFVHVSTDEVYGSIDDGSWPETDPLLPNSPYAAAKAGSDLLARSYHRTHGLDVVLTRCSN
NYGPYQFPEKVIPRFVSNLLDGRPVPLYGDGANVRDWLHVDDHCRGIVLAAAKGRAGEIY
NIGGGTELSNIDLTFRLLAEVGAGEDMIERVADRKGHDRRYSVDWSKIRDELGYTPQVPF
DEGLAATVAWYRDNRDWWEAVRR
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtcgtggtcaccgggggagccgggttcatcggctcgcacctcgtccgtacggtg
ctcgccgaccggcacccgtcgctggccggcgccgaggtcgtcgtgctcgacgcgttcacc
tacgccggccggatcgagaacctcgccccggtgcgcgactccccgcggctgcggatcgag
cacgccgacatccgcgaccccgcccgggtccgcgaggtgctcaccggcgccgacctggtg
ctgcacctggccgccgagacccacgtggaccgctcgatcgccggcgcggcggacttcgtg
accaccaacgtcgtcggcacccaggtgctgctgcaggcggcgctcgatctcggcgtcggc
cggttcgtgcacgtctccaccgacgaggtgtacggctccatcgacgacggctcgtggccg
gagaccgatccgctgctgccgaactcgccgtacgcggcggcgaaggcgggcagcgatctg
ctggcccgctcctaccaccgcacgcacggcctggacgtcgtgctgacccgctgctcgaac
aactacggcccgtaccagttcccggagaaggtgatcccgcgtttcgtcagcaacctgctc
gacggtcggccggtcccgctctacggcgacggcgccaacgtgcgggactggctgcacgtc
gacgaccactgccgcggcatcgtgctggccgcggcgaagggccgggccggtgagatctac
aacatcggtggcggtaccgagctgagcaacatcgacctcacgttccggctgctcgccgag
gtcggcgcgggcgaggacatgatcgagcgcgtcgcggaccgtaagggacacgaccgccgg
tactcggtggactggtcgaagatccgcgacgagctcggctacacgccgcaggtgccgttc
gacgaggggctggccgcgaccgtggcctggtaccgggacaaccgcgactggtgggaggcg
gtgcgcaggtga
DBGET
integrated database retrieval system