Polyangium aurulentum: E8A73_016825
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Entry
E8A73_016825 CDS
T08107
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pauu
Polyangium aurulentum
Pathway
pauu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pauu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
E8A73_016825 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pauu03400
]
E8A73_016825 (ligD)
Enzymes [BR:
pauu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
E8A73_016825 (ligD)
DNA repair and recombination proteins [BR:
pauu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
E8A73_016825 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
UQA62043
LinkDB
All DBs
Position
complement(4212310..4214553)
Genome browser
AA seq
747 aa
AA seq
DB search
MKLEEYRRKRDPERTNEPFSDDPTVTEPSCGGVYVVHLHDARRRHYDLRIEIGGALESFS
VPRGPTLDPHERRLAVRTEPHPMEYLDFEDVIPEGNYGAGPMIAWDRGRVRYIGAPAEQQ
LEKGKLDFELHGHKLHGRFTLVHPKKSEKDWLLFKKNDAFAKEGSDIVTAEPRSIYSGLT
VEELGSAPSIARALGEDAARLGAPLRAIEPDMIPMVPSTGKKGRTRSGMIYELALDGVRT
LARKNGREAVLLNAQLRDMTRVYPEIARAVRALAAEEVVIDGEIIALDDAGQPSLERLAQ
RIHLVRDDDVRRAMLAVPVVYVVFDLLALGGRDLRPLPLRARKELLRRLLPGAGMMRVLD
ALEGDPGPLLELCSARNLAGILAKRADAPYRPGPRRSRDWVKLACSRKTDTQGHEKEEAE
IERLSAEVAKVAEVAEVARTKPGTHAKQRVTISNPGKVLWPGEGFTKKDLASYYKDIAPV
MLPYLRDRPVMLVRYPDGIEGKSFYQWNVPPGLPSWMQTLRIQLESQEPMDVFHIRDADT
LLYVTNMAAIPIHVLASRAATIDACDFFTIDLDVSGGTFANVITLARTLRGMLDTIGLVG
FPKTSGQSGLHIFVPLGPGNSYDTARTLADLLGHLLVARHPNIATMERMKVNRGPRVYVD
TGQTGPSRTIVAPYAARAKPGATVSTPLEWDEVNDALDPRVFDLRSVPARVDKLGDPMAR
LLEVRPSVADAAARLEKLVRGSKKRAA
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcgaagaatatagaagaaagagggatccggagcgcacgaacgagccgttcagt
gacgatccgaccgtgacggagccgagctgcgggggcgtgtacgtcgtccacctccacgac
gcgcggcggcgtcattacgacctgcgcatcgagatcggcggcgccctcgagagcttctcg
gtcccccgcgggccgaccctcgatccgcacgagcgaaggctcgccgtgcgcaccgagccg
cacccgatggaatacctcgatttcgaggacgtgatccccgagggcaactacggcgccggg
cccatgatcgcctgggaccgcggccgcgtgcgctacatcggcgcgcccgccgagcagcag
ctcgaaaagggcaagctcgacttcgagctgcacggccacaagctgcacggccgattcacg
ctcgtccacccaaagaaatcggagaaagactggctgctcttcaagaagaacgacgccttc
gccaaggagggcagcgacatcgtcaccgccgagccgcgctccatctactcgggcctcacg
gtcgaggagctcggcagcgccccctcgatcgcccgcgccctcggcgaggacgccgcgcgc
ctcggcgcgcccctgcgcgcaatcgagccggacatgatccccatggtcccgtccaccggc
aagaagggtcgcacgcgcagcgggatgatctacgagctcgcgctcgacggcgtccgcacc
ctggccaggaaaaacgggcgcgaggcggttctcctcaatgcgcagctccgcgacatgacg
cgcgtctatcccgagatcgcccgcgccgttcgcgcgctcgcggccgaggaggtggtcatc
gacggggagatcatcgccctcgacgacgccggacagccgagcctcgagcggctcgcgcag
cgaatccacctcgtgcgcgacgacgacgtccgccgcgccatgctggctgtcccggtggtc
tatgtcgtcttcgatctgctcgccctcggaggccgcgacctgcgcccgctgccgctgcgc
gcacgcaaggagcttttgcggcgcctgctccccggagccggcatgatgcgcgtgctcgac
gcgctcgagggcgatcccggcccgctgctcgagctttgcagcgcgcgaaacctcgcgggc
atcctcgccaaacgcgccgacgctccctatcgccccggccccaggcgctcacgcgattgg
gtgaagctcgcgtgcagccgcaagacggacacgcagggccacgaaaaggaggaggccgaa
atcgagcgcctctccgccgaggtcgccaaggtcgccgaggtcgccgaggtcgcccgcacg
aagcccggcacccatgcaaagcagcgcgtcacgatctccaatcccggcaaggtgctctgg
ccgggcgagggttttaccaagaaggacctcgcgagctactacaaggacatcgcccccgtc
atgctgccgtacctgcgcgaccggccggtcatgctggtgcgttaccccgacggcatcgag
ggcaagtcgttctaccaatggaacgtgccgccgggcctgccttcctggatgcagacgctg
cgcatccagctcgagagccaggagccgatggacgtcttccacatccgcgacgccgacacg
ctcctttacgtcaccaacatggccgccatccccattcatgtgctcgcctcgcgcgcagcc
accatcgacgcgtgcgatttcttcaccatcgatctcgacgtgagcggtgggacattcgcg
aacgtcatcacgctcgcgcgcacgctgcgggggatgctcgatacgatcggcctcgtcggc
tttccgaagacctcgggtcaatcggggctgcacatcttcgtgccgctcgggccgggaaac
tcgtacgacacggcgcgcacgctcgcggacctgctcggtcacctgctcgtggcgcggcac
ccgaacatcgcgaccatggagcgcatgaaggtcaaccgcggcccccgcgtgtacgtggat
accggacaaacgggcccatcgcgcacgatcgtcgcgccctacgcggcgcgggcgaagccg
ggggccacggtctcgacgccgctcgaatgggacgaggtgaacgacgcgctcgacccgcgc
gtcttcgacctccgctcggtgccggcccgcgtcgacaagctcggcgacccgatggcgcgc
ctgctcgaggtgcgccccagcgtcgcggatgcggcggcgcggctcgagaagctcgtccgc
gggagcaagaaacgggcagcctga
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