Prunus avium (sweet cherry): 110766187
Help
Entry
110766187 CDS
T05161
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110766187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110766187
03041 Spliceosome [BR:
pavi03041
]
110766187
03009 Ribosome biogenesis [BR:
pavi03009
]
110766187
03016 Transfer RNA biogenesis [BR:
pavi03016
]
110766187
Enzymes [BR:
pavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110766187
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110766187
Spliceosome [BR:
pavi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110766187
Complex C
U4/U6.U5 tri-SnRNP related factors
110766187
Ribosome biogenesis [BR:
pavi03009
]
Eukaryotic type
Pre-60S particles
Helicases
110766187
Transfer RNA biogenesis [BR:
pavi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110766187
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
110766187
NCBI-ProteinID:
XP_021825158
UniProt:
A0A6P5TDD0
LinkDB
All DBs
Position
Unknown
AA seq
988 aa
AA seq
DB search
MEESPTAAKRKEPEVSEITETPIHESPQKRRHLTRTCVHEVAVPSEYTSTKDESVHGTLS
NPVYNGKAAKTYEFTLDPFQQISVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQR
VIYTSPLKALSNQKYRELSQEFKDVGLMTGDVTISPNASCLVMTTEILRGMLYRGSEVLK
EVAWVIFDEIHYMKDRERGVVWEESIIFMPPAVKMVFLSATMSNATEFAEWICNLHKQPC
HVVYTDFRPTPLQHYVFPVGGNGLYLVVDENEQFREENFVKLHDTFSKQKSDGHRSSNGK
ASGRTAKGGTASGGSDIFKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNTQEEK
DDVEDVFRKAVLCLNEEDRQLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLVK
ALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICII
MIDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLLSRAEGQFTAEHVIKNSFHQFQHE
KALPDIGKKVSNLEQEVAILDASGEAEVAEYHKIKLDIAQLEKKMMTEITRPERVLYFLL
PGRLVKIREGGTDWGWGVVVNVVKKPSSALGSLPSRGGGYIVDTLLHCSPGSSENSSQPK
PCPPRPGEKGEMHVVPVQLPLISALSKLRISIPSDLRPLEARQSILLAVQELGTRFPQGL
PKLNPVKDMGIEDPEIVELVTQIEALEQKLYAHPLHKSQDVQQIKCFQRKAEVDHEIQQL
KSKMRESQLQKFRDELKNRSRVLKKLGHIDTEGVVQLKGRAACLIDTGDELLVTELMFNG
TFNDLDHHQIAALASCFIPGDKSNEQIQLRTELARPLQQLQESARRIAEIQHECKLEVNV
DEYVESTVRPYLMDVIYCWSKGASFADVTQMTDIFEGSIIRSARRLDEFLNQLRTAAHAV
GEVALEEKFAGASESLRRGIMFANSLYL
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatctccaacagctgcgaaacgaaaagagcctgaagtgtcagagatcacagaa
acccccatccatgaatctccccagaagcgacgccatttgactcgaacatgtgtgcatgag
gttgcagttcccagtgagtacacttcgaccaaggatgagtcggttcacggaaccctctcg
aatcctgtgtataatggcaaggcggccaagacatatgaatttacccttgacccatttcag
cagatatctgtggcatgcttagaacggaatgagtcggttttggtttctgcccatacttca
gcaggcaagactgcagtcgcagagtatgcaattgccatggcttttagagataagcagagg
gttatatatacttcaccactgaaggctttgagcaatcagaagtatagagagctcagccag
gagtttaaagatgttggattgatgactggagatgttacaatctcacccaatgctagttgt
ttggtgatgacaactgagatccttaggggaatgctttacaggggttcggaggttttaaag
gaagttgcctgggttatctttgatgaaattcattacatgaaggatcgcgaaagaggggtt
gtttgggaagagagtattatatttatgcctccagctgttaaaatggtttttctttcagcc
acaatgtccaatgccactgagtttgcagagtggatttgtaatttgcacaaacagccttgc
catgtggtgtacacagattttagaccaactcctctgcagcattacgtttttccagtgggt
gggaatggtttgtatcttgtggtggacgagaatgaacagttcagggaggaaaattttgtg
aagctgcatgatactttttcaaagcagaaaagtgatggtcacaggagttcaaatggcaag
gcaagtgggagaactgcaaaaggtgggactgcatctgggggttctgatatcttcaaaatt
gttaagatgattatggaacggaaatttcagccagttataattttcagcttcagtagaaga
gagtgtgaacaacatgcgatgtccatgtctaagcttgattttaacacccaagaagaaaag
gatgatgttgaagatgtttttcgtaaggcagtgctctgcttaaacgaggaagacaggcag
ttgcctgctattgagttaatgttgccactccttcagcgaggcattgctgttcatcattct
ggccttcttcctgttatcaaggaactggttgaacttcttttccaggaaggccttgtaaag
gcactttttgctactgagacatttgcaatgggcttaaacatgccagcaaaaactgttgtt
ttcacagctgttaagaagtgggatggtgatagtcatcgatatataggatctggtgagtac
attcagatgagtggaagggctgggcgtcgtggcaaagatgatcgcggtatttgtatcata
atgattgatgagcagatggaaatgaacacactcaaggacatggttttgggtaaaccagct
cctttagttagtactttcagactcagctactactcaattttaaatttgctgagccgtgcg
gaaggccaattcacagctgaacacgtgataaagaattcattccaccaatttcagcacgaa
aaggctttacctgatatagggaaaaaggtttcaaatcttgagcaggaagtggcaatactt
gatgcatcaggagaggctgaagttgctgagtatcataagataaaacttgatatagcccaa
cttgaaaagaaaatgatgacagagataacgaggcctgaaagagttctatattttcttctt
cctggtcgcctggtcaagattagggaaggtggtacagattggggctggggagttgtagtt
aatgtggttaaaaagccgtcatccgcattaggttcactgccttcacgcggtggtggttat
atagtggatactttgcttcactgttctcctggttcaagtgagaacagttcacaaccaaaa
ccatgccctcctcgtcctggagaaaagggtgaaatgcatgtagtccctgtccaattgccc
ctgatttctgctctaagcaaactcagaatatccattccttctgatttgcggccattggaa
gcgaggcaaagtattctgcttgcagtccaggagctgggaactcgttttccacaaggcctt
ccaaagctgaatcctgtaaaggatatgggcattgaagatcctgaaattgttgagttggtt
actcaaatagaggcccttgaacagaaattatatgcacatccgctgcataagtctcaagat
gttcagcagattaaatgttttcaacggaaagcagaggtggatcatgaaattcaacaactt
aagtccaagatgcgtgagtcccagcttcaaaagtttcgtgatgaacttaagaaccgttcg
cgagtcttgaagaagcttggtcacattgatactgagggtgttgtccagttaaaggggcga
gcagcctgcttgatagacacaggagatgaactccttgttactgaactgatgtttaatggt
acgttcaacgatttggatcatcatcaaattgcggctcttgcaagttgttttattccagga
gataaatcgaatgagcagatacaattgaggacagagcttgctagaccattacaacaactc
caagagagtgcaagaagaatcgcagagatacaacatgaatgcaaattagaagtgaacgtt
gatgagtatgtggaatcaacagtgaggccatacttaatggatgtgatttattgttggtcg
aagggtgcaagttttgcggatgttacacaaatgacagatatatttgagggtagtatcatt
agaagtgctagaagacttgatgaatttttgaatcagttgcgtactgccgctcatgctgtt
ggagaagttgctttagaggagaaatttgctggagcaagtgaaagcctacggcgaggtatc
atgtttgcaaactccctttatctgtag
DBGET
integrated database retrieval system
