Pseudomonas avellanae: BKM03_09805
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Entry
BKM03_09805 CDS
T05369
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pavl
Pseudomonas avellanae
Pathway
pavl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pavl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKM03_09805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavl03019
]
BKM03_09805
03009 Ribosome biogenesis [BR:
pavl03009
]
BKM03_09805
Enzymes [BR:
pavl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BKM03_09805
Messenger RNA biogenesis [BR:
pavl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BKM03_09805
Ribosome biogenesis [BR:
pavl03009
]
Prokaryotic type
rRNA processing factors
BKM03_09805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AVB19512
LinkDB
All DBs
Position
complement(1956043..1959429)
Genome browser
AA seq
1128 aa
AA seq
DB search
MCAERRFRQPGNRRYYMKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKG
RITRIEPSLEAAFVDFGSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEK
EERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGL
IVRTAGLGRSSEEMQWDLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDI
GEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPS
GGSIVIDPTEALVSIDINSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDF
IDMTPAKNQRAVEEKVRESLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRC
NGTGIIRDVESLSLAILRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTR
ARIIILPNDQLETPHFEVQRLRDDSPEAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQ
EAAVKTAPARANAPVPVEVAAPAPTPAPVAHEPSLFKGLVKSLVSLFATKEEPVVAPAVV
EKPAAEQRPARNEERRNGRQQSRGRNNRRDEERKPREERAPREERAERAPREERAPREER
APREERAVREPREAREESAPREERPARTSRERKPREAREDRPVRELREPLDAVATTAQAG
PAVNLAREERPERAPREERQPRAPREERQPRAEQAAVAVSEEEEVLLNDEQANDDNQDGN
DGSEGDRPRRRSRGQRRRSNRRERQRDANGNVIEGSEENGSEENGSEETANLEDNSATDL
SAGLGFTAAAVGGIISATAEADAHQQAERANSTTESVTAAEPVQQAAVAHASVVEAPTVE
APVAETSAVETPAPQAPVAEQTVEVPAVEAPVADDAPVAQPAPEVEVQPAAVEAPAIAAQ
TELLEAPHAERVVPFTPTPVPAPQAPVEAAAHEEVPATESSELPTPVEAPAAEPAASVKE
EPAPYIAPQAAVEEQASAPAEQEPVIVETPAVPVSSTGRAPNDPREVRRRKREEEARRQQ
ETTAASAQAESAQPSQATEEKTDVAATEQPAVQPHHEAEKETEPKPLV
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
gtgtgtgccgaacgccgtttccggcagcccggaaaccgacggtactacatgaaaagaatg
ctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagacggccagcgcctc
tacgacctggacatcgagtcaggtgcacgcgagcagaagaaggccaacatctataaaggc
cggatcactcgtatcgaacccagccttgaggctgcctttgtcgatttcggctctgagcgc
cacggctttctgcccctcaaggaaatctcccgcgagtacttcaagaaagcccctgaaggc
cgcgtcaatatcaaggacgtcctgagcgaaggccaggaagtcatcgttcaggtcgagaaa
gaagaacgtggcaacaagggcgcagccctgaccactttcatcagccttgccggtcgctat
ctggtcctgatgccgaacaaccctcgcgccggtggcatttcgcgccgtatcgaaggcgaa
gaacgcaacgaactgcgtgaagcgctgaacggcctgattgctccagccgacatgggcctg
atcgttcgcactgccggccttggccgcagcagcgaagaaatgcaatgggacctcgattac
ctgctgcaactgtggaccgccatcaaggaagcgtccctggatcgttcggcgcctttcctg
atctaccaggaaagcaacgtcatcatccgcgccatccgcgattacctgcgccaggacatc
ggcgaagtcctgatcgacagcgtcgaagcccaggaagaagccctgaccttcatccgccag
gtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgttccgctgttcaac
cgtttccagatcgaaagccagatcgaaaccgccttccagcgcgttgtcgaactgccttcc
ggtggctccatcgttatcgatccgaccgaagccctggtgtccatcgacatcaactcggcg
cgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaaccttgaagcggct
gaggaaatcgcccgtcaattgcgtctgcgtgacatcggcggcctgatcgtcatcgacttc
atcgacatgacgccggccaagaaccagcgcgcagtggaagaaaaagtccgcgaaagcctc
gaagccgaccgcgcccgcgttcaggtcggtcgcatctcgcgcttcggtctgctggaaatg
tcccgtcagcgcctgcgtccatcgctgggtgaaagcagcggcatcgtctgcccgcgctgc
aacggcaccggcatcatccgtgacgtcgaatcgctgtcgctggccatcctgcgcctgatc
gaagaagaagccctgaaagaccgtactgcagaagtacgtgctcaggtgccgatcccggtt
gctgcgttcctgctcaacgagaagcgcaactcgatcaccaagatcgaactgcgcactcgt
gcgcgtatcatcattctgccgaacgaccagctcgaaacgccgcacttcgaggttcagcgt
ctgcgtgacgacagcccggaagcgcacaacagccagaccagctacgagatcgccgctgcc
gctgccgaagtggaagaaattgccccactggccgcagcaacgcgcaccctggttcgccag
gaagccgctgtcaagactgccccggcacgtgccaacgcacctgttccggtggaagtcgct
gcgcctgctccaacgcctgcgcctgtcgctcacgagccaagcctgttcaagggcctggtg
aaatcgctggtcagcctgttcgcgaccaaggaagagcctgttgttgcgccggctgtggtt
gaaaaacctgctgccgaacagcgcccggcccgtaacgaagagcgtcgcaacggtcgtcaa
caaagccgtggccgcaacaaccgtcgtgacgaagagcgcaagcctcgtgaagagcgtgca
ccccgcgaagaacgtgcagaacgcgcaccgcgcgaagagcgtgcgcctcgtgaagaacgt
gcaccgcgtgaagagcgcgccgttcgcgagcctcgtgaagcccgtgaagagtcagcgcca
cgcgaagaacgtccggcccgtacatcccgtgagcgcaagccacgtgaagcccgtgaagat
cgcccggtccgtgaactgcgcgaacctctggacgcagtcgccaccacagcccaggccggt
ccagctgtgaacctggctcgtgaagagcgtcctgagcgcgctccacgcgaagaacgccag
ccgcgcgcacctcgtgaagaacgtcaaccacgcgccgaacaggctgcggttgccgtgagc
gaagaagaggaagtgctgctcaacgacgaacaggccaacgacgacaatcaggatggcaac
gatggcagcgaaggtgatcgtcctcgccgccgttcccgtggtcagcgtcgtcgcagcaac
cgtcgcgagcgtcagcgtgatgccaacggcaacgtgatcgaaggctctgaagagaacggt
tcggaagaaaacggctctgaagaaaccgctaatctcgaagacaacagcgccaccgatctg
tcggcgggcctgggcttcaccgctgcagcagtgggcggcataatcagcgccaccgccgaa
gccgatgcgcaccagcaggcagagcgtgcaaacagcaccaccgaaagcgttacagccgca
gaacctgtgcaacaggctgctgttgcccatgcttctgttgtcgaagcacctacggtcgaa
gcaccggtagccgaaacatcggcagttgaaacgccagcacctcaagcaccggttgcagag
cagacggtcgaagtgcctgctgttgaagcgccggttgcagacgatgctccggttgcccag
cctgctccggaagtggaagttcagcctgcagcggtcgaagccccggctattgccgcgcag
accgagctgctcgaagcacctcacgccgagcgcgtcgtgccgttcacgccaacgcctgta
cctgcgccacaagcgccggtcgaagcagcggcgcatgaggaagtgccagccactgaatca
tccgaactgccaacgccggtcgaggcacctgctgccgagcctgctgcgtccgtgaaagaa
gagcctgcgccttacatcgcgcctcaagccgctgtcgaggaacaagcatctgcaccagca
gaacaggaacctgtgatcgtcgaaacaccggctgtaccggtcagcagcaccggccgtgca
ccgaacgatccacgtgaagttcgtcgccgcaagcgcgaagaagaagcacgccgtcagcag
gaaacaactgctgccagcgcgcaagcagaatcggcccagccttcccaggccaccgaggaa
aagaccgacgtagcggcaactgagcaacctgcagttcagccgcaccatgaagccgagaaa
gaaaccgagcctaaacctctcgtttaa
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