Pogonomyrmex barbatus (red harvester ant): 105428615
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Entry
105428615 CDS
T04903
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105428615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pbar03041
]
105428615
Enzymes [BR:
pbar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105428615
Spliceosome [BR:
pbar03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105428615
Complex C
U4/U6.U5 tri-SnRNP related factors
105428615
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
SLFN-g3_helicase
Flavi_DEAD
T2SSE
ATPase
TsaE
PhoH
Motif
Other DBs
NCBI-GeneID:
105428615
NCBI-ProteinID:
XP_011639306
UniProt:
A0A6I9WB63
LinkDB
All DBs
Position
Unknown
AA seq
887 aa
AA seq
DB search
MSKYRREESSSEDTDSEEERRKKDIKERDSFASRLRAKDESKRRNVAMPAGSGAAEAAKR
LKIMETDTKEKLIPKLRTESRRKYLEKRKEDKVAELEADILDDEYLFDEDVLTEREREER
AHKKQLLYLAKEHEKARELERMQRYHMPLEKGKMESESDMITDKEPPQSEQSKWESDQMS
SAVFRFGAKDRKAQQEYNLLMEDEMIEFVQVLHMPGHKDKKREASPPPHVKHLQTIQETK
KSLPIYPFKKDLIHAIKEHQVLIIEGETGSGKTTQIPQYLYESGFADDGKIIGCTQPRRV
AAMSVAARVAHEMAVKLGNEVGYAIRFEDCTSQRTRIKYMTDGTLHREFLSEPDLASYSV
MIIDEAHERTLHTDILFGLVKDIARFRPDLKLLVSSATLDATKFSEFFDDAPIFRIPGRR
FPVDIYYTKAPESDYIEACVVSIIQIHVTQPSGDILVFLTGQEEIETCQEMLQERVRRLG
SKLAELLILPVYANLPSDMQIKIFQPTPPGARKVVLATNIAETSLTIDNIVYVIDPGYAK
QNNFNPRTGMESLIVVPISKASANQRAGRAGRVAPGKCFRLYTAWAYQHELEDNTVPEIQ
RINLGNAVLTLKALGIDDLMHFDFLDPPPPETLILAMEQLYALGALNHRGELTKLGRRMA
EFPLDPMMAKMLLASEKYRCSEEVATIAAMLSVNGAIFYRPKDKIIHADAARKNFHVPGG
DHLTLLNVYNQWAQSDFSTHWCYENFIQHRSMKRARDVREQLVGLMQRVEMELVSGITET
VNIRKAITAGYFYHVARLSKGGCYKTAKHNQQVAIHPNSSLFQDLPRWLLYHELVLTTKE
FMRQVTEIESKWLLEVAPHYYKPKEVEDSTNKKMPKVAGRSRPDGTN
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaatataggcgagaagaatcctcgagtgaggacacagacagcgaagaggagcgt
cgcaagaaagatattaaggagagagatagctttgctagtcgtctcagagctaaggatgaa
agtaaaaggcgcaatgttgcgatgcctgctggttccggagctgctgaagcagcaaagaga
cttaaaatcatggagactgatacaaaagaaaagctgataccaaaattaagaactgagtct
cgtaggaaatatctggagaaacgtaaagaggacaaagttgcagagttggaggctgacatt
cttgatgacgaatatctatttgatgaagacgtcttaacagaaagagagagggaagagaga
gctcataagaaacaattgttatacttagcaaaagagcatgagaaagcaagggaactcgaa
cgtatgcaacgctatcatatgcctcttgagaagggtaaaatggaatcagaatctgatatg
ataacagacaaggaaccaccacagtccgaacaaagtaaatgggaatcagatcagatgtca
tcagctgtttttcgttttggtgctaaagatagaaaagctcaacaagaatataatcttctt
atggaggatgaaatgatagagtttgttcaagtcctgcatatgcctggacataaagataag
aaacgtgaagcaagtccacccccacatgttaaacatctgcaaacgatacaggagacaaag
aaaagtctgcctatttatcccttcaaaaaagatttaatacatgctattaaagaacaccag
gttttgataatagaaggtgaaacgggatcgggaaaaacaacgcagattccacaatatcta
tacgaatctggatttgcagatgatggcaagattatcggatgtacgcaaccgcggcgagta
gcggctatgtcagtagctgcaagagtagcccacgaaatggccgttaaactgggaaatgaa
gttggctatgctattcgtttcgaagattgtacatcacaacgaactcgcattaaatatatg
actgatggtacgctgcatcgagagtttcttagtgagcctgatctagcatcatatagcgta
atgataattgatgaggcgcacgaacgtactttacataccgatattttatttggactcgtg
aaagatatcgcgaggtttcgtcctgatttgaaactgttagtatcatcagctacattggat
gctacaaaattcagtgaatttttcgatgatgctcctatatttagaataccaggacgccgc
tttcccgtcgatatctattacacaaaagcgccggaatcagattatattgaagcgtgtgta
gtttctattattcaaattcacgtaacacaaccatcgggtgatatattggtatttctcacc
ggacaagaagagatcgagacgtgtcaggagatgttacaagagagagtgagaagactaggt
agcaaattggcagagcttttaattttacctgtctatgcgaatctaccaagcgacatgcag
ataaaaatatttcaaccaactccacctggcgcgagaaaagttgtattggcaaccaacata
gcagagacctcgttgactatagataatatagtatatgtaatagatcctggttatgcgaag
cagaataattttaatcctcgcactggtatggagagtttaatagttgtaccaattagcaaa
gcatctgcgaatcagagagcaggacgcgcgggaagagtagcgcctgggaaatgctttcgt
ttatacacagcttgggcttatcagcatgaacttgaagataatactgtacctgaaattcaa
agaattaatttgggtaatgcagtattgactttgaaagctcttggaattgatgatttgatg
cattttgatttcttggatcctccaccgcctgaaacattgatcttggcgatggagcaacta
tacgcattgggcgcgctgaatcatcgcggagagctgacaaaactcggacgtagaatggct
gaatttccgctggaccctatgatggcaaagatgctgttagctagcgagaaatatcgctgt
tcggaagaggtagcaactatagcggccatgctttcggtaaacggcgctatcttttataga
ccaaaggataaaattatacatgcggatgctgcacgcaaaaatttccatgtacctggtggt
gatcatttgacgctccttaatgtgtacaatcaatgggcacaaagtgattttagtacacat
tggtgttacgaaaatttcatacagcatagatctatgaagcgagcaagggatgttagagaa
caattggtaggtctgatgcagcgtgtagagatggaattagtctcgggaattacagaaaca
gtcaatattagaaaggctattacagctggttatttttatcatgtggcacgcttatcgaag
ggaggttgctacaaaaccgcaaagcacaatcaacaagtcgcaatacatccaaatagttcc
ttatttcaggatcttccacgctggcttctttatcacgaacttgtcctcactactaaggaa
tttatgcgtcaggtgacagaaattgaaagtaaatggttgctggaagtggcacctcattat
tataagcctaaggaagtagaagattcaacgaataaaaagatgccgaaagttgcaggcaga
tcacgaccagatggaacgaattaa
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