Pogonomyrmex barbatus (red harvester ant): 105432561
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Entry
105432561 CDS
T04903
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pbar03041
]
105432561
Enzymes [BR:
pbar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105432561
Spliceosome [BR:
pbar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
105432561
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
Ank_2
Ank
nSTAND3
AAA_19
HA2_N
Ank_4
AAA_22
ATPase
PhoH
Ank_5
UvrA_inter
AAA_14
AAA_7
T2SSE
Inhibitor_I66
SRP54
DnaB_C
AAA_25
Motif
Other DBs
NCBI-GeneID:
105432561
NCBI-ProteinID:
XP_011645719
UniProt:
A0A6I9WZV0
LinkDB
All DBs
Position
Unknown
AA seq
1153 aa
AA seq
DB search
MPRRKQQRHRPIGEDTRIAVNLTXKKLLDSPDQKELEFPSSYTAEERAYIHELARELGLK
SKSRGKGTNRFLTVYKREGSTIVQADAVIKLQKHSKQSIYNLMQTFPLNHKECQDLLPPI
ERERPLNNDVNTNTKAMGRLNNSIPQVPQLKTNFDVLHFRKSLPIFNAREEILNGLSNHQ
VVIIAGETGCGKTTQVPQYILEHYQQKHQACRIICTQPRRLSAVSVAERVAFERDEKIGQ
TFGYQIRLESRVAPKTLLTYCTNGVLLRTLMGGDSALTTLTHIIVDEVHERDRFCDFLLI
ALKDALVKYRSLKLILMSATMDTSIFAKYFNKCVVINVPGRSYDVDVYFLEDVLKMTGYM
SKEMLAKKKEFLKWKDKQKTLESWKQYKPQHSNRNTKSEKSLLPAPILAQQNDPIPEKVK
LEPWLVEEMDKSIFDAWVNGREDNFAQLLHFILSENVSVDYQHSETSITPLMAAAARGCI
NTTEQLLNLGANLNLRSANDWSALDWAKSRNHTECAELIEAYMKTYDCAVPNNELAHVAD
TTLSEEDKLLLDIYHHTFNDDNIDYDLLLELILYVHIKMPPGSILIFLPGYDDIVTMRER
ISAEDKKMNQGLRYNLYVLHSNMQTCDQKKVFKSSPQGTRKIILSTNIAETSITIDDVVY
VIDSGKVKEKSFDAISGVCTLTSNWISQACAKQRKGRAGRCRRGICYRLFSSVRFDNMQS
YQTPEILRLPLQELCLYTKHLTSGNTPIAEFLDKALEPPSNVVTRNAVQLLKTIDALDPW
EDLTELGSHLLDLPIEPRLGKMLLYAVVLKCLDPILTIVCSLAYKDPFILPSQPSQKRAL
TAARKKFATGTFSDHMVVLRAFQGWQNARATGKERAFCEKNFISAPVMEMVVGMRTQLLG
QLRASGFVRARSPGDIRDLNSNSENWAVVKAALTAGLYPNLIRVDREHMQLRTQKEVKVF
FHPSSTLRDYPKSPRMTSAQTHATNVQSLPCDWLLYEEMSRTGRFCHVKVVTLVNPLTVA
LFSGPARLPMDVIYEAEAVPESESDSEVDESHEGTIFKLDDWVVFKLDPETAQLFLHLRQ
KWNALFLRRMKAPNKAMSALDEKVINTLVTVITNEEQACGLQQPAGIGQRPRPLIVDYYP
ANVRRDDYPERYF
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgccacgaaggaaacagcagagacatcgtcccataggggaggatactcgaattgcagtg
aatttgacttaaaaaaagttgttggattctccggatcaaaaggagttagaatttccatca
tcgtacacagcagaagagcgagcgtacattcatgaattggctagagaacttggtctcaag
tcaaagagccgagggaaaggtacaaatcggtttttgacagtgtataagagagaaggctca
acgatagtccaagcagatgctgtgataaaattgcagaaacattcgaagcagagtatatac
aatttgatgcagacctttccattaaatcacaaagaatgccaagatttacttcctccaatt
gaaagagaacgtcctcttaataatgatgtaaatacaaatacaaaagcgatgggcagatta
aacaacagcataccacaagtacctcaattgaaaactaatttcgatgtgctacactttcgc
aaatctctgccaatttttaatgcgagggaggaaattctcaatggcctgagcaatcatcaa
gtagtcataattgcaggtgaaacgggatgtggcaaaacaacacaagtgccacagtatata
ttagaacattatcagcagaagcatcaagcttgtagaattatttgtacacaacctaggcgg
ttgtctgcggtatccgtggccgaaagagtagcgttcgaaagagacgagaaaatcggccag
acatttggatatcaaataagactggaaagtagagtagctcctaaaactctcctaacatac
tgtacaaatggagtgttgctcagaactttaatgggcggtgattccgctttgactacgctc
acgcacatcatcgtcgatgaagttcatgaacgagatagattttgcgatttccttctgata
gctttaaaggatgctttggttaaatatcgttccttgaaacttatacttatgagcgccacg
atggatacttcaatctttgccaagtatttcaataaatgtgtcgtcatcaatgttcccggt
cgttcatacgacgtagatgtatacttcctagaggacgttttgaagatgactggttacatg
tctaaggaaatgcttgcaaagaaaaaagagtttttaaagtggaaagataaacaaaagact
ttagaatcttggaagcaatataagccccagcattccaacagaaatacaaaaagcgagaaa
agtttactgcctgctccaattttagctcaacaaaatgatcctatacctgagaaagttaaa
ctagaaccttggctggtagaagaaatggacaaaagtattttcgacgcatgggtaaacggt
agagaagataattttgcacaacttttacattttatactatccgaaaacgtttctgtagat
tatcagcattcagagacttctataacaccattgatggctgccgcagctagaggctgcata
aacacgaccgaacaacttttaaatttaggtgcaaatcttaatttgagatccgccaacgat
tggtcggcgttagattgggcaaagagcagaaaccatacggaatgtgccgaattaatcgaa
gcttatatgaaaacttacgattgtgcagtaccgaataatgaattggcacacgtcgcggat
acgacgctttccgaagaagataagttattgctcgatatatatcatcatacgtttaacgat
gacaatatcgattatgacctgttgttggaattgattttatacgtccatataaaaatgcct
cctggttctatcttaatatttctaccaggatacgatgacatagttactatgagagaaaga
atcagtgcggaagataagaagatgaatcagggtttacgttacaatttgtacgttcttcat
tcgaatatgcagacttgtgatcaaaagaaggtgtttaaatcgagtcctcaaggcacgcga
aaaatcattctttctacaaacatagctgagaccagcatcacaattgacgatgttgtatac
gttattgattcaggaaaagttaaagagaagtccttcgatgctatatctggtgtatgtact
ctgacttccaactggatatctcaagcttgtgcgaagcaacgaaaaggtagagcgggcaga
tgcagaagaggaatctgctatcgtttattctcttcggttcgattcgacaacatgcagtct
tatcagacacctgaaattctacgactacctctgcaagaactctgcttatacacgaaacat
ttaacttcgggaaatacgcctatagctgaatttttagataaagctttggagccgccatct
aatgtagtaacgaggaacgcggttcaattgttaaaaacaatcgacgcgttagatccgtgg
gaagatcttactgaattagggagtcatttactagatttaccaattgaaccaagactcgga
aagatgttgttgtatgccgtcgttttaaaatgtttggatcccattttaacgattgtttgt
agtttagcatacaaagacccctttatattaccgtcacaaccgtcacaaaagagagccttg
actgccgcgcgaaaaaaatttgctaccggaacattctcggatcatatggtggttttgcga
gcattccaaggctggcagaatgccagagcgaccggcaaggaacgtgctttttgcgagaaa
aatttcatctccgctcccgtgatggaaatggtagttggaatgcgtacgcagcttctcggt
caattacgcgcatccggcttcgttcgagccagaagtcccggggacattcgggacttaaat
tcaaattcggaaaattgggctgtcgtgaaagcagccctgaccgcgggcttgtatcccaac
ttaattcgagttgatcgagagcacatgcagttacgaacgcagaaagaggtgaaagtattc
ttccatccctcatcaactttgagagattatccaaagtctccgaggatgacgtccgcacaa
acgcatgcaactaacgtgcaatctttgccgtgcgattggctactttacgaagagatgagc
cgtacaggacgtttctgtcacgtgaaagttgttaccctcgtaaatccattaactgtagcg
ttatttagtggaccagctagattaccgatggatgtaatctacgaagccgaagctgttccg
gaaagcgaatcagactccgaggttgacgaatctcatgaaggaaccatttttaaacttgat
gattgggtagtgtttaaacttgatcctgagacggcccaattgttcttacatctacgacag
aagtggaacgctttgttccttaggcgtatgaaggcgccaaacaaagctatgtcagcgtta
gacgagaaagtcattaacactttggtgactgtgatcacgaatgaggaacaagcatgtggg
ctccagcagcccgctggcatcggccaacgtccgcgtccattaatcgttgattattatccc
gcaaatgtcagaagagacgattatccggaaagatatttctaa
DBGET
integrated database retrieval system
