Pseudomonas brassicacearum DF41: CD58_05525
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Entry
CD58_05525 CDS
T03174
Name
(GenBank) exodeoxyribonuclease
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
pbc
Pseudomonas brassicacearum DF41
Pathway
pbc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
CD58_05525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbc03400
]
CD58_05525
Enzymes [BR:
pbc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
CD58_05525
DNA repair and recombination proteins [BR:
pbc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
CD58_05525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
DUF4807
Motif
Other DBs
NCBI-ProteinID:
AHL32379
UniProt:
W8PEX7
LinkDB
All DBs
Position
complement(1246359..1247738)
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AA seq
459 aa
AA seq
DB search
MIKDPFARLGLDREVLTVSQLNGRARVLLEDVFSNIWVEGEISNLARPASGHVYFTLKDS
GAQVRCALFRQNAARVRQALKDGLAVKVRGKVSLFEGRGDYQLILDTVEPAGDGALRLAF
DALKEKLSAEGLFSAERKVPLPAHPQRIGIISSPTGAVIRDIISVFRRRAPQIALTLIPT
AVQGREATAQIVRALKLADARGFDALILARGGGSLEDLWCFNEEAVARAVDACVTPIVSA
VGHETDVSISDFVADVRAPTPSAAAELLAPDAGDLVRRVESLHRRLVMRMRDRLMRDQLR
LEGLTRRLRHPGERLRQQAQRLDDLDMRLRRAFERSLNTRRERLIRLETRLAGQHPGRHL
ALLRQRLDSLAERLPRAMREGLKARRVQLHNQMQTLHIVSPLATLGRGYSILLDERGHAI
RSAGQTQTGQRLTARLGEGELLVRVEDNHLTPVTLSLLD
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgattaaagatccctttgcccgactgggcctggaccgcgaggtcctgactgtcagccag
ctcaacggccgtgcgcgggtgttgctcgaagacgtgttcagcaacatctgggtcgagggg
gaaatctccaaccttgcccgtccggcctccggccacgtgtatttcaccctcaaggacagc
ggcgcccaagtgcgttgcgcactgttccggcagaacgccgcacgggtgcgccaagccttg
aaagacgggctggcggtgaaggtgcgcggcaaggtttcgctgttcgagggccgtggcgac
tatcaactgatcctcgacaccgtggagccggccggcgatggtgccctgcgcctggccttc
gatgccctgaaggaaaagctcagcgccgaaggcctgttcagcgccgagcgcaaggtgccg
ctaccggcccacccgcaacgcatcggcatcatcagctcgcccaccggtgcggtgatccgc
gacatcatcagcgtcttccgccgtcgagcgccgcagattgccctgaccctgattcccacc
gccgtgcagggccgcgaagccaccgcacaaatcgtccgcgccctgaaactggccgatgcc
cggggtttcgacgcgctgatcctggcccgtggcggcggttcgctggaagacttgtggtgc
ttcaacgaagaagccgtggcccgggcggtggatgcctgcgtcacgccgatcgtcagcgcc
gtgggtcatgaaaccgatgtatccatcagcgatttcgtcgccgacgtgcgcgctccgacc
ccgtctgcggccgctgaactgctggctccggacgccggtgacctggtgcgccgggtcgaa
agcctgcatcgccggctggtgatgcgcatgcgcgaccgcctgatgcgcgatcaactgcgc
ctcgagggcctgacccggcgcctgcgccaccccggtgaacgcctgcgccagcaagcccag
cgcctcgacgacctggacatgcgcctgcgtcgggccttcgagcgcagcctcaatacccgc
cgcgaacgcttgatccgcctggaaacccgcctggccgggcaacatccgggccggcacctg
gcgttgctgcgccagcgcctggacagcctggccgaacgcctgccccgggccatgcgcgaa
ggcctgaaagcgcgacgtgtgcagttgcacaaccagatgcagacgctgcacatcgtcagc
cccctggcgacccttggccggggctacagcatcttgctcgatgagcgtggccatgcgatc
cgcagcgccgggcaaacccagaccggccaacgcctgaccgcccgccttggcgaaggcgag
ctgctggtacgggtcgaagacaatcacctgacgccagtcaccctttctttactggattga
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