Prionailurus bengalensis (leopard cat): 122492840
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Entry
122492840 CDS
T07574
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
pbg
Prionailurus bengalensis (leopard cat)
Pathway
pbg04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
pbg00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
122492840 (COL13A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pbg00536
]
122492840 (COL13A1)
Glycosaminoglycan binding proteins [BR:
pbg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122492840 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
122492840
NCBI-ProteinID:
XP_043452455
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All DBs
Position
D2:30410055..30555193
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AA seq
737 aa
AA seq
DB search
MVAERPRKAAAAGARGPGELSAPATVALAVAPAERCARLPSPGSCGLLALALCSLALSLL
AHFRTAELQARVLRLESERGEQQMETAILGRVNQLLDEKWKLHSRRRREAPPKTSAGCHC
PPGPPGPAGRPGLPGDKGAIGIPGRVGVKGQPGEKGAPGDAGMSIIGPRGPPGQPGTRGF
PGFPGPIGLDGKPGPPGPKGEMGLMGPRGQPGPQGQKGEKGQCGEYPHREHPSGTFSSLR
SSQIITLKGEQGQAGIQGPPGPPGPPGPSGPLGPPGLPGPMGPPGLPGPPGPKGDPGIQG
YHGRKGERGMPGMPGKHGAKGAPGITVAGMKGEPGTPGAKGEKGAAGSPGLLGLLGQKGE
KGDAGNSFGGGRGEPGPPGLPGPPGPKGEAGVDGQAGPPGRQGDKGEPGAAGEQGPAGPK
GSKGEPGKEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPP
GHDGEKGPRGKPGDMGPPGPQGPPGKAGPTGMKGEDGHVGSPGEKGEKGETGQAGPPGLD
GPTGEKGEPGGQGRPGTTGLPGPIGLPGFTGEKGEPGEKGDPGVEVPGPPGPEGPPGPPG
LQGVPGPKGEAGLDGAQGEKGVQGEKGDRGPLGLPGASGLDGRPGPPGTPGPVGVPGPAG
PKGERGSKGDLGMTGPSGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLDA
PCPLGEDGLPVQGCWNK
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atggtagccgagcgcccccgcaaagcggcagccgccggtgcccgcggccccggggagcta
agcgcgcccgcgacggtggcgctggcggtggcgccggcggagcgctgcgcgcggctgccg
agcccggggtcgtgcgggctgctggcgctggccctgtgttcgctggcgctcagcctgctc
gcccactttcggaccgcggagctgcaggcccgggtgctgcgcctggaatcggagcgtggg
gagcagcaaatggagacggctattttgggacgagtcaaccaactgctggatgagaaatgg
aagctccactctcggaggcgccgggaggcccccccgaagacgtctgcagggtgtcactgc
ccaccaggacctcctggtcccgctggaagacccggcctcccaggggacaaaggtgccatt
gggattcctggacgtgtgggagtaaagggccaaccaggcgagaagggggccccaggagat
gccggcatgtccatcatcggtccccgcggcccccctggtcagccgggcactcgaggtttt
cctggatttccgggtcccatcgggctagatggaaaaccgggcccccccggacccaaagga
gagatgggcctgatgggtccccgaggacagccgggacctcaaggacaaaaaggagaaaag
ggtcagtgtggagagtacccacatagggagcacccgagcggcactttttcgtctctgcgc
tccagtcagatcattaccctgaagggcgaacagggccaggccggtatccaaggaccaccg
gggccaccaggcccccctggaccaagcggacccctggggcccccgggactgccagggccc
atggggccacccggcttacctgggcctccaggaccaaagggagacccaggaatccagggt
taccacggccgaaagggagaacgaggcatgccggggatgccgggcaaacacggagccaag
ggggctcccggaatcaccgtggcggggatgaagggtgagccggggaccccaggagccaag
ggcgaaaagggggctgcaggctcccccgggctgctcggcctcctggggcagaagggagaa
aaaggcgacgctggcaactcctttggagggggcagaggggagcccggccccccagggcta
cctgggcccccaggcccaaagggagaagctggtgttgatggccaggccggccccccagga
cggcaaggagacaagggtgagcccggagcagccggagaacagggaccggctggccccaag
ggcagcaagggggaaccaggcaaagaaatggtggactacaatgggaacatcaacgaggct
ctccaggagatccgaacgctggccttgatggggccccctggtcttcccgggcaaatcggc
ccacccggagccccggggatcccaggccagaagggggagattggacttccaggccctcca
ggacacgacggggaaaagggacctcgaggcaaaccaggcgacatgggccctcccggtccc
caaggccccccaggaaaggctgggcccacaggaatgaagggtgaagacggacatgtgggg
agcccaggagaaaagggggagaaaggggagacggggcaagcaggcccaccgggtctagac
ggcccaactggggagaaaggagaaccaggtggccaagggagacccggaacaacaggattg
cccggcccgatcgggctcccgggatttacaggggagaaaggagagcccggggagaaggga
gacccaggagtggaggttcctgggcccccagggccagagggacctcccggacctccggga
ctccaaggtgttcctggaccaaagggggaagcgggactggatggagcacaaggagagaag
ggtgtccagggagagaaaggagaccgagggccgctgggattacccggagcttcaggtttg
gacggcaggcctgggccaccgggtactccaggaccagtcggagttccaggcccagcggga
ccaaagggcgagaggggcagcaaaggcgaccttgggatgacaggaccatcaggagcggct
gggcttcctggtttacacggaccacccggggacaaaggaaaccggggggagagggggaag
aaaggctctagagggcctaaaggggataagggagaccaaggagcgcctggattagacgcc
ccctgcccgttgggcgaagatggcttaccagtccagggctgttggaacaagtga
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