KEGG   Paraburkholderia bryophila: NDK50_24680
Entry
NDK50_24680       CDS       T08797                                 
Name
(GenBank) ligase-associated DNA damage response DEXH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
pbry  Paraburkholderia bryophila
Brite
KEGG Orthology (KO) [BR:pbry00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pbry03400]
    NDK50_24680
Enzymes [BR:pbry01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     NDK50_24680
    5.6.2.6  RNA 3'-5' helicase
     NDK50_24680
DNA repair and recombination proteins [BR:pbry03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    NDK50_24680
SSDB
Motif
Pfam: Lhr_WH DEAD_assoc DEAD Helicase_C
Other DBs
NCBI-ProteinID: WCM24035
LinkDB
Position
2:complement(784111..786825)
AA seq 904 aa
MIEPVDPDEPEASGPDASPQRRRAPRSRRIPRSREQQARLDAREPAFETVPFALDEAAAR
RPFADKLDAWFEARQWQPFEFQREVWREIGRGASGLLHATTGAGKTWAVWFGALATFAVS
SARSANGSGTASDAIKSAAGSAVRPSTRRSSPLTQPAPLTVLWITPMRALAADTARALQS
SALELAVPWSVGLRTGDTSSAERARQNRRMPSALVTTPESLSLMLTRPDARGVLAQVRLV
VVDEWHELLGNKRGTQTQLALARLAHWQPELQVWGLSATLGNLPFAADVLLAPVKTPRVE
VHGALPKALIVDTVIPDTIERFPWGGHVGMRQVGAVADAIGDAQTSLVFTNTRSQCEVWY
QALLEARPEWAGLIALHHGSLDQEVREWVERGLKSGLLKVVVCTSSLDLGVDFLPVERVF
QIGSPKGVARLMQRAGRSGHAPGRPSRVTIVPTHALELVEAAAAREAVEKRQIEGRDTPD
QPFDVLVQHLVTVAIGGGFDARELIDEIRSTYAYRHLTQAEFDWALGFVEGGGTALRAYP
DYHRVMRDSDGVYRVPRDDLVRRHRNNIGTIVANGTLHVAYLSGGRIGAIEESFISRLKP
GDIFTFGGRALELIRVQDMTAWVRRATSSRGAMPQWAGSRMPLSSELADATLTMLARAAT
GVYDEPEMRAVRPLLELQHKWSALPEPGVLVVELLKSREGHHFFCYPFAGRTAHIGLGAL
LAWRVAREQPGTFSISMNDYGFELLSAQPFDWAAQLESGLLSLDELEHDILASLNSSELS
MRRFREIARVSGLVFQGHPGQQKSARQLQASSGLFYEIFRSHDSGNLLLNQADAEVLLQE
LDAQRIRVALERMNASRVIVMRPKKPTPFAFPLIVGRLREKISTEKLADRVERMLAELEK
AARV
NT seq 2715 nt   +upstreamnt  +downstreamnt
atgatcgagccggttgatcccgacgagcccgaggcttccgggcccgacgcgtcgccccaa
aggcgtcgcgcccccaggtcgcgccggattccacgcagtcgcgagcagcaggcacggctc
gacgcgcgcgaaccggccttcgaaacggttccctttgcgctcgacgaggcggccgcgcgc
cgcccattcgccgataagctcgacgcgtggttcgaggcgcgccagtggcaaccgttcgaa
tttcagcgcgaggtctggcgcgagattggccgcggcgctagcgggttattgcatgcgact
acgggtgccggtaaaacctgggcggtgtggtttggtgcgcttgcaacttttgcggtatcg
agcgccaggtcagctaatggctcgggtaccgcgtcagatgcgattaagtccgccgcagga
tctgctgtcagaccttccacccggcgcagctcgccactcacgcagccggccccgctcacc
gtactctggatcacgccgatgcgcgcgctcgccgccgacaccgcccgcgccttgcaaagc
tcggcgctcgaattggcggtgccgtggagcgtcgggctgcgcaccggcgacacgtcgtcg
gccgaacgcgcgcggcagaaccggcgcatgccgtcggccttggtcaccacgcccgaaagc
ctgtcgctgatgctcacgcggcccgacgcacgcggcgtgctcgcgcaggtacgtctggtg
gtggtcgatgaatggcatgagctgctcggcaacaaacgcggcacgcagactcaactcgca
cttgcgcgtctcgcgcattggcagcctgaattgcaggtgtggggcctgtcggccacgctg
ggcaacctgcctttcgctgccgacgttttactcgcgcccgtcaaaacgccccgcgtcgag
gtgcacggcgcgctgcccaaggcgctgatcgtcgatacggtcattcccgataccatcgaa
cggtttccgtggggcggccatgtcggcatgcgccaggtcggcgcggtagccgacgcgatc
ggcgacgcgcagacctcgctcgttttcaccaacacccgctcgcaatgcgaagtctggtac
caggcgttgctcgaggcacggcccgaatgggccggcctgatcgcgttacatcacggctcg
ctcgatcaggaagtgcgcgaatgggtcgagcgcggcctgaaaagcggcttgctgaaagtg
gtggtgtgtacatcgagtctcgatctcggagtcgatttcttgccggtggagcgcgtattt
cagatcggctcgcccaaaggcgtcgcgcggttgatgcaacgtgcgggacgctccgggcat
gcgcccggcaggccctcgcgcgtgacgatcgtgccgacccatgcgctcgaactggtcgaa
gcggccgccgcccgcgaggccgtcgagaagcgtcagatagaaggccgcgacacccccgac
caaccgttcgatgtgctggtccagcatctggtgaccgtggcgatcggcggcgggttcgac
gcgcgcgaactgattgacgagattcgcagcacgtacgcgtaccggcatttgacccaggcc
gaattcgactgggcgctcggcttcgtggaaggcggcggcaccgcgttacgcgcctatccc
gactaccatcgcgtgatgcgcgacagcgacggcgtgtaccgtgtgccacgcgacgatctg
gtgcgccgccatcgcaacaacatcgggacgatcgtcgcgaacggcaccttgcatgtcgct
tatctatcgggcggcagaatcggcgcgatcgaagagtcgttcatttcgaggctgaaaccg
ggcgatatctttaccttcggcggccgcgcgctcgaattgattcgcgtgcaggacatgacc
gcgtgggtgcgtcgcgcgacctcgtcacgcggtgcgatgccgcaatgggccggcagccgg
atgccgttgtcgtccgaactcgccgatgcgacactgaccatgctcgcgcgcgccgccacc
ggcgtctacgacgaaccggaaatgcgtgcggtacggccacttctcgagttgcaacataag
tggtcggcgttgcccgagccgggcgtgctggtggtggagttgctgaaatcgcgcgaggga
caccatttcttttgttatccgtttgcggggcgtacggcacatattgggctcggcgcattg
ttggcgtggcgagttgcgcgtgagcagcccggcacgttttcgatttcaatgaacgactac
ggtttcgagctgttgtccgcgcaaccattcgattgggccgcgcaactcgaaagcggcttg
ctctctctcgatgagctcgagcatgacattctcgcgagcctgaattcgtcggaactctcg
atgcggcgttttcgtgaaattgcacgcgtgtcggggctggtatttcaagggcatcctgga
cagcagaaaagcgcgcggcaattgcaggcgtcgagtggtcttttctatgagatcttccgt
agtcacgatagcggcaatctgctgctgaatcaggccgatgccgaagtactgctgcaggaa
ctcgacgcgcagcgcattcgcgtcgcgctcgaacggatgaatgccagccgcgtgattgtg
atgcggccgaaaaagccgacgccgtttgcgtttccgttgatcgtcggacgcttgcgcgag
aagatcagtacggagaagcttgcggatcgcgtcgagcggatgctggcggagctagagaaa
gcggctcgtgtatga

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