Pseudoalteromonas carrageenovora: PC2016_3040
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Entry
PC2016_3040 CDS
T06565
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pcar
Pseudoalteromonas carrageenovora
Pathway
pcar03420
Nucleotide excision repair
pcar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PC2016_3040
03430 Mismatch repair
PC2016_3040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcar03400
]
PC2016_3040
Enzymes [BR:
pcar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PC2016_3040
DNA repair and recombination proteins [BR:
pcar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PC2016_3040
MMR (mismatch excision repair)
Other MMR factors
PC2016_3040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
Viral_helicase1
AAA_11
DUF3553
SAP18
Motif
Other DBs
NCBI-ProteinID:
QBJ73226
LinkDB
All DBs
Position
I:3453542..3455707
Genome browser
AA seq
721 aa
AA seq
DB search
MDVSELLDGLNDKQRDAVAAPLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASAYSIFAV
TFTNKAAKEMRSRVEETLKAPVGGMWIGTFHGLSHRILRAHHREANLPEAFQILDSDDQL
RMIKRLLKSMNIDDKKWPAKQFGWYISAKKDEALRPKDIQAYDINEQMMLRVYAAYQEAC
DRAGLVDFAEILLRSYEVLKNNPTLLRHYQQRFAHMLVDEFQDTNTIQYAWLKLLAGDTQ
SIMIVGDDDQSIYGWRGAKIENIKRFLTDFDAETIRLEQNYRSTATILKASNALIKNNSE
RMGKSLWTDGNEGEPISIYAAFNELDEARFVSSKLRSWLNAGNALQDAAILYRSNAQSRV
LEEAMLQEGLKYRIYGGMRFFERQEIKDALSYLRLVGNRQDDAAFERVINTPARGIGDKT
LSHIRDCARAESLPLWYAAKAIVEQQHLSGRAAGAVSKFVELVEHIEDKISDLTLHEQAK
YAIQTSGLMAMYQAEKGEKGRARVENLEELISACDQYELPEEEEFSSPLQGFLAYTSLES
GEGQADEHEDAVQMMTLHSAKGLEFPLVFMVGVEEGMFPSQQSNEETGRLEEERRLCYVG
MTRAMEKLYISHAESRRLYGQEKYHSPSRFLREIPEDCVEEIRIKTQVSRPPAAGRFSAS
VSHAVFEESGFNLGQRVLHAKFGIGTVLNYEGSGAQSRVQVNFDDLGSKWLVTAYARLQA
V
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttctgaattactcgatggcttaaatgacaaacaacgcgatgccgttgcagcc
ccactacaaaacatgctggtattagcaggtgctgggtctggtaaaacacgagtgctggtt
catcgtattgcgtggttaatgcaggttgagcaagcctctgcttatagtatttttgcggtt
acttttaccaataaagccgctaaagaaatgcgctctcgagtagaagaaaccttaaaagca
cctgtcggtggcatgtggattggtactttccatggcttatcacaccgtattttgcgcgct
catcaccgagaagcaaacctgccagaagcctttcaaatattagactctgacgatcagcta
agaatgatcaagcgcttattaaaatcaatgaatattgatgataaaaaatggccagctaaa
caatttggctggtacataagcgctaaaaaagacgaagctcttcgccctaaagatattcaa
gcttacgatataaatgagcaaatgatgctgcgtgtatatgccgcgtatcaagaagcgtgt
gaccgcgctggtttagtcgattttgctgaaatactgctacgtagctatgaggtgcttaaa
aataaccctacactgcttcgccattaccaacagcgctttgcacacatgctggtagacgag
tttcaagataccaataccattcagtacgcatggttaaagctactcgcaggcgatacacaa
agcattatgattgtgggcgacgacgaccaaagtatttatggttggcgcggcgctaaaata
gaaaatataaaacgttttttaactgactttgacgccgagactattcgccttgagcaaaac
taccgctcaaccgcaaccatcctaaaagcatctaatgcgcttataaaaaataactcagaa
cgcatgggtaaaagcttatggaccgatggtaacgaaggcgagcctatatcaatttatgca
gcgtttaacgaattagacgaagcccgctttgtaagcagcaaattacgtagctggttaaat
gccggtaatgcattgcaagacgccgccattttataccgtagcaacgcgcaatctcgtgta
ctcgaggaagccatgctacaagaaggcttaaagtaccgtatttacggtggtatgcgattc
ttcgagcgtcaagaaattaaagatgcgctatcgtacttacgcttagtaggtaatcgccaa
gacgacgccgcatttgagcgcgttattaacacccctgcgcgtggtattggcgataaaaca
ttaagtcatatacgtgattgtgcacgggctgaatcactcccgctttggtacgcagctaaa
gctattgttgaacaacagcatttatctggccgcgcggcaggtgcagtatctaaatttgta
gagctggttgagcacatagaagacaaaattagtgaccttacactgcacgaacaagctaaa
tacgctattcaaacctctggtcttatggctatgtaccaagctgaaaaaggcgaaaaaggc
cgtgctcgcgtagagaacttagaagagcttattagtgcctgcgatcagtacgaactccct
gaagaagaagagtttagttcgccacttcaagggtttttagcttatacatcgcttgaatct
ggtgaaggccaagctgatgagcacgaagacgcggtacaaatgatgacccttcactcagct
aaaggcttagagtttccgcttgtgtttatggtgggtgttgaagaaggcatgttcccttca
cagcaaagtaatgaagaaacaggacgcttagaagaagagcgacgtctttgttacgtaggt
atgacccgcgcaatggaaaaactatacataagccacgccgaaagtcgccgtttatacggt
caagaaaaataccacagtccttcacgctttttacgtgaaataccagaagactgcgtagaa
gaaattcgtattaaaacgcaagtgtcgcgcccgccagctgcggggcgttttagtgcctca
gtaagccatgctgtatttgaagaaagcgggtttaacttaggccagcgcgtactacacgct
aagtttggtatagggactgtgcttaattacgaaggtagcggcgcgcaatcgcgtgtgcaa
gtaaactttgacgaccttggcagtaaatggctagtaaccgcatatgcacgacttcaagct
gtataa
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