Pseudomonas canavaninivorans: LOY40_09305
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Entry
LOY40_09305 CDS
T08625
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
pcas
Pseudomonas canavaninivorans
Pathway
pcas00071
Fatty acid degradation
pcas00280
Valine, leucine and isoleucine degradation
pcas00310
Lysine degradation
pcas00362
Benzoate degradation
pcas00380
Tryptophan metabolism
pcas00410
beta-Alanine metabolism
pcas00640
Propanoate metabolism
pcas00650
Butanoate metabolism
pcas00907
Pinene, camphor and geraniol degradation
pcas00930
Caprolactam degradation
pcas01100
Metabolic pathways
pcas01110
Biosynthesis of secondary metabolites
pcas01120
Microbial metabolism in diverse environments
pcas01200
Carbon metabolism
pcas01212
Fatty acid metabolism
Module
pcas_M00087
beta-Oxidation
pcas_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
pcas00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
LOY40_09305 (fadB)
00650 Butanoate metabolism
LOY40_09305 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
LOY40_09305 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
LOY40_09305 (fadB)
00310 Lysine degradation
LOY40_09305 (fadB)
00380 Tryptophan metabolism
LOY40_09305 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
LOY40_09305 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
LOY40_09305 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
LOY40_09305 (fadB)
00930 Caprolactam degradation
LOY40_09305 (fadB)
Enzymes [BR:
pcas01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
LOY40_09305 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
LOY40_09305 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
LOY40_09305 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
LOY40_09305 (fadB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
UVM74329
LinkDB
All DBs
Position
2054012..2056159
Genome browser
AA seq
715 aa
AA seq
DB search
MIYEGKAITVKALESGIVELKFDLKGESVNKFNRLTLNELRQAVDTIKADASIKGVIVSS
GKDVFIVGADITEFVDNFKLPDAELIAGNLEANRIFSDFEDLNVPTVVAINGIALGGGLE
MCLAADYRVMSTTAKIGLPEVKLGIYPGFGGTVRLPRLIGADNAIEWIAAGKENRAEDAL
KVGAVDAVVEPGKLQEAALETVKRAISGEFDYKAKRQPKLEKLKLNAIEQMMAFETAKGF
VAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFVKLAKTSAAQSLIGLFLNDQEL
KKKAKAYDEIARDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKL
LVGRVDKGRMTAAKMAEVLNGIRPTLSYGDFGHVDLVVEAVVENPKVKQAVLAEVEDKVK
EDTILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSELAIATTVA
YAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKIMEKFGWPMGPAYL
MDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAVDVLYEAKRLGQKNGKGFYAYETDKRGKQ
KKVADSSVLEVLKPIVYEQREVTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVY
GIGFPPFRGGALRYIDSIGVAEFVALADQYADLGALYHPTAKLREMAKNGQSFFG
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgatttacgaaggtaaagccatcacggttaaggctcttgaaagtggcatcgtcgaattg
aaattcgacctcaagggtgagtccgtcaacaagttcaaccgtctaaccctgaatgaattg
cgtcaggccgtggacactatcaaggcagatgcttcgatcaagggtgtgatcgtcagcagt
ggcaaggacgtgttcatcgtcggcgccgacatcaccgaattcgtcgacaacttcaagctg
cccgatgccgaactgatcgctggcaacctcgaagcgaaccgtatcttcagcgacttcgaa
gacctcaacgtaccgaccgtcgtggccatcaatggcatcgccctgggtggcggcctggaa
atgtgcctggcggcggattaccgtgtcatgtccaccacggccaagatcggcctgccggaa
gtcaagctgggcatctacccaggctttggcggtaccgtgcgcctgccgcgcctgattggt
gccgacaacgccatcgaatggattgccgctggcaaggaaaaccgtgccgaagacgcgctg
aaggtcggtgccgtagacgccgtggttgaaccaggcaagctccaggaagcggcgcttgag
actgtcaaacgcgccatcagcggtgagttcgactacaaggccaagcgccagccgaagctt
gaaaaactcaagctcaacgccattgaacaaatgatggccttcgaaaccgccaagggtttc
gtagccggtcaggcgggcccgaactacccggcgccggtcgaagcgatcaagaccatccag
aaagccgcgaatttcggtcgcgacaaggccttggaagtcgaggccgccggcttcgtgaaa
ctggccaagacctccgccgcgcagagcctgatcggtctgttcctcaatgaccaggaactg
aagaaaaaggccaaggcctatgacgaaatcgcccgcgacgtgaagcaggccgccgtgctc
ggcgccggcatcatgggtggcggtatcgcctaccagtcggcgtccaaaggcacgccgatc
ctgatgaaggacatcaacgaacacggcatcgagcagggtctggcggaagctgccaagctg
ctggtcggccgcgtcgacaaaggccgcatgaccgccgcgaaaatggctgaagtgctcaac
ggcatacgtcctacgctgtcctacggcgatttcggccatgtcgacctggtggtcgaagcc
gtcgtcgagaacccgaaggtcaagcaagcggtactggctgaagtcgaagacaaagtcaaa
gaggacaccatcctcgcctcgaacacctcgaccatttccatttcgctgttggccaaggcc
ctcaagcgtccggaaaacttcgtcggcatgcacttcttcaacccggtgcacatgatgccg
ctggtggaagtcatccgtggcgaaaaatcgagcgaactggcgatcgccaccaccgtggcc
tacgccaagaaaatgggcaagaacccgatcgtcgtcaacgactgcccgggcttcctggtc
aaccgcgtgctgttcccgtatttcggcggttttgccaagctggtcagtgccggcgtggac
ttcgtgcgcatcgacaagatcatggaaaaattcggctggccgatgggcccggcgtacctg
atggacgtggtcggcatcgacaccggccaccacggtcgcgatgtcatggccgaaggcttc
ccggaccgcatgaaggacgaccgccgttcggccgtcgacgtgctctacgaagccaagcgc
ctcggccagaagaatggcaagggcttctacgcctatgagaccgacaagcgcggcaagcag
aagaaagtcgccgactcgtcggtgctggaagtgctcaagccgatcgtctacgagcagcgc
gaagtcaccgacgaggacatcatcaactggatgatgatcccgctgtgcctggaaaccgtg
cgttgcctggaagatggcattgtcgaaaccgccgccgaagccgacatgggtctggtctac
ggcatcggtttccctccattccgtggcggtgcgctgcgctacatcgattcgatcggtgtg
gccgagttcgttgccctggctgaccagtacgctgatctgggcgcgctctaccacccgacc
gcgaagctgcgtgaaatggccaagaacggccagagcttcttcggttaa
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