Pseudomonas canavaninivorans: LOY40_09370
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Entry
LOY40_09370 CDS
T08625
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pcas
Pseudomonas canavaninivorans
Pathway
pcas03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LOY40_09370 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcas03400
]
LOY40_09370 (mfd)
Enzymes [BR:
pcas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LOY40_09370 (mfd)
DNA repair and recombination proteins [BR:
pcas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LOY40_09370 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UVM74340
LinkDB
All DBs
Position
complement(2068960..2072409)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELGF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAPT
QFLLGSSLVLDIGQKLDVEQMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVQSIRLLPAKEFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGVGRERFPAKPLPDL
AIEAKATQPLAALAGFLDGFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAG
KDRLAITIAPLNDGLVLDDPALALVAESPLFGQRVMQRRRREKRADAANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIENQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYETFSAGFP
FEETVDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRTTLLKLKAEQLGIKKV
DGGPNVGRIEFEAQTPVDPLVLIKLIQGQPKRYKFEGATMFKFMVPMERPEERFNTVEAL
FERLTPTTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtcttccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggctatcgccgaggccgccagcgctgcaaagcgcttc
accctgttgttgaccgccgacagccagagtgccgagcggctcgagcaggagctgggtttc
ttcgccccggatttgccggtgttgcatttcccggactgggaaaccctgccctacgacctt
ttttcgccgcaccaggacatcatttcccagcgcatcgccagcctttatcggctgccggag
ctcagtcatggcgttttggtagtgccaatcaccacagccctacatcgcttggcgccgacc
caattcctgctgggcagcagcctggttctggacattggccagaagctcgacgtcgagcaa
atgcgtactcggcttgaggccagtggctaccgctacgtcgacaccgtgtacgagcacggc
gagttcacggtgcgcggggcgttgatcgacctgttcccgatgggcagcaaattgccgtat
cgcatcgatctgttcgatgacgaaatcgagaccttgcgcaccttcgacccggagaaccag
cgctccatcgacaaggtccagtcgatccgcctgctgccggccaaggaattcccactgcaa
aaagacgcagtgactcgcttcaaggcgcgctttcgcgaacgtttcgatgtggatttccgc
cgttgtccgatcttccaggacctgagcagcggaatcaccccagccggtatcgagtactac
ttgccgttgttcttcgaagaaacctccacgttgttcgattatttgccccaggacacccag
gtattttccctgccgggcatcgagcaggctgcggaaaacttctggaacgacgtgcgcaat
cgctacgaagaacgtcgcgtcgatccgtcccgtcctttattgccgcccgccgagttgttc
ctgccggtggaggactgcttcgcccggctcaagagctggccgcgcgtggtggcgagccag
caggacgtggaaactggcgttggccgcgagcgcttccccgccaagcccttgccggacctg
gcgatcgaagccaaggccacgcaaccgctggcggccctggccggtttcctcgacggattc
cctggtcgcgtgctgtttaccgccgagtccgcaggccgccgcgaagtactgctggaactg
cttgaacgcctgaagctgcgcccgaagaccgtcgacagctggcctgactttgtcgcgggc
aaggatcgcctggcgatcaccatcgcgccgcttaacgacggcctggtccttgacgatccc
gccctggccctggtggccgaaagcccgttgttcggccagcgcgtgatgcagcgtcgccgc
cgcgagaaacgcgccgacgccgccaacgacgcggtcatcaagaacctcaccgaactgcgc
gaaggtgcgccggtggtgcacatcgatcatggcgtaggccgttacctgggcctggcgacc
cttgagatcgaaaaccaggccgccgaattcctcaccctggaatacgccgagggcgccaag
ctctacgtgcctgtggcgaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ttggccccgctgcatcgcctgggttcggaaacctggcagaaggccaagcgcaaggccgcc
gaacaggtgcgcgacgtggcggccgagttgctggatatctatgcccgccgtgccgcgcgc
gaaggctatgcattcgccgacccgaaagccgactacgaaaccttcagcgccggattcccg
tttgaagaaaccgtcgaccagcagaccaccatcgaagccgtgcgcgccgacatgcttgcg
cccaagcccatggaccgcctggtgtgcggcgacgtaggcttcggcaagaccgaagtggcg
atgcgcgccgcgttcattgccgtgcacggcggcaagcaagtggcgatcctggtgccgacc
accctgctcgcccagcagcactacaacagtttccgcgaccgcttcgccgactggcccgtg
accgtggaagtgatgagccgcttcaagtccgccaaggaagtgaacgccgccgtcgcggac
ctggccgagggcaagatcgacatcgtcattggcacgcacaagctgctgcaggacgatgtg
aagatcaagaacctggggctggtgatcatcgatgaggaacaccgctttggcgtgcgccag
aaagaacagctcaaggccctgcgcagcgaagtcgacatcctgaccctgaccgccacgccg
atcccgcgcaccttgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccaca
ccgccagcccggcgcctgtcggtgcgcaccttcgtcatggagcagaacaaaagcacggtc
aaggaagccctgctgcgtgagctgctgcgcggcggccaggtttattacctgcacaacgac
gtgaagaccatcgagaaatgcgccgccgacctggccgagctggtaccggaggcgcgcatc
ggcattggtcacgggcagatgcgcgagcgcgagctcgaacaagtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgagcgtgccgacaagttcggcctggcccagttgcaccag
ttgcgcggccgggtcggacgcagtcaccaccaggcctacgcctacctgctgacaccgccg
cgccagcagatcaccccggacgcggaaaagcgcctggaagccattgccaatacccaggac
ctgggcgccggtttcgtgctggccaccaacgacctggaaatccgtggcgccggcgaattg
cttggcgacggccagagcggccagatccaggcagtgggcttcaccctgtacatggaaatg
ctcgaacgggcggtcaaatcgatccgcaagggcgagcagccgaacctcgaccagcccttg
ggcggcgggccggagatcaacctgcgagtgccggcgctgatcccggaagattatctgccg
gatgtccacgcacgcctgatcctctacaagcgcatcgcctcggccactgacgaggaaggc
ttgaaggacctgcaagtggaaatgatcgaccgcttcggcctgctaccggagccgaccaaa
aatctggtgcgcaccacgctgctcaagctcaaggccgagcaactgggcatcaagaaagtc
gacggagggcccaacgtcggccgtatcgagttcgaagcccagaccccggtcgatccactg
gtgctgatcaagctgatccagggccagcccaaacgctacaagttcgaaggcgccacgatg
ttcaagttcatggtgcccatggaacgcccggaagagcgtttcaataccgtggaggcgctg
ttcgagcgcctcactccgaccactgcttga
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integrated database retrieval system
