Pseudomonas canavaninivorans: LOY40_28945
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Entry
LOY40_28945 CDS
T08625
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pcas
Pseudomonas canavaninivorans
Pathway
pcas03420
Nucleotide excision repair
pcas03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LOY40_28945 (uvrD)
03430 Mismatch repair
LOY40_28945 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcas03400
]
LOY40_28945 (uvrD)
Enzymes [BR:
pcas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LOY40_28945 (uvrD)
DNA repair and recombination proteins [BR:
pcas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LOY40_28945 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
LOY40_28945 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_11
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UVM72539
LinkDB
All DBs
Position
6398404..6400584
Genome browser
AA seq
726 aa
AA seq
DB search
MRDDLSLLLNSLNDAQRQAVAASVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSIL
SVTFTNKAAAEMRHRIEQLMGINPAGMWVGTFHGLAHRLLRAHWQEAGLSQTFQILDSDD
QQRLVKRVIRELGLDEQRWPARQAQWFINGQKDEGLRPQHIQASGDLFLATMRSIYEAYE
AACQRAGVIDFSELLLRALDLWRDHPGLLAHYQKRFRHVLVDEFQDTNAVQYAWLRLLAK
GGDSLMVVGDDDQSIYGWRGAKIENIHQYSADFPDAEVIRLEQNYRSTAGILKAANALIA
NNTGRLGKELWTDGSEGEAINLYAAFNEHDEARYVVETIESALKTGLARSDIAILYRSNA
QSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPTRGI
GEKTVEAIREHARHSHVSMWEAMRLLVDNKGVTGRAAGALKAFMDLIEDLAAKCGEMPLH
LMTQTVIEQSGLIAYHEAEKGEKGQARVENLEELVSAARNFETTEEDEDLSPLSAFLGHA
SLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRL
AYVGITRAMQNLVMTYAETRRLYGSETYNKVSRFVREVPKGLIQEVRLSNSVSRPFGGSQ
QQSSSLFGGSDIPETGFSLGQAVRHSVFGDGVILNFEGAGAQARVQVNFSEGSKWLMLGY
AKLEAI
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgatgatctctcccttctgctgaactccctaaacgatgcccaacgccaggctgtt
gctgcctccgtgggccgtcaattggtcctggccggtgccggctccggcaagacccgagtg
ctggtgcaccgtatcgcctggttgatccaggtcgagaacgcctcgccccattcgatcctg
tcggtcacctttaccaacaaggctgccgccgagatgcgccatcgcatcgagcagctgatg
ggcatcaacccggccggcatgtgggtcggcaccttccacggcctggcccatcgcctgctg
cgagcccattggcaggaagccggcttgagccagacgttccagatcctggacagcgatgac
cagcagcgcctggtcaagcgggtcattcgcgaactgggcctggatgaacaacgctggccg
gcccgtcaggcccaatggttcatcaacggccagaaggacgaaggcctgcgcccgcaacat
atccaggccagcggcgaccttttcctggcgaccatgcgcagcatctatgaagcctacgag
gcggcgtgccagcgtgccggcgtcatcgacttctccgagctgctgctacgggccctggat
ctctggcgtgaccacccgggcctgctggcccattaccagaaacgcttccggcatgtcctg
gtggacgagttccaggacaccaacgccgttcaatatgcgtggttgcgcctgcttgccaag
ggcggcgacagcctgatggtggtgggtgacgacgatcagtcgatctatggctggcggggc
gcgaagatcgagaacatccaccagtactcggcagacttccccgacgccgaggtcattcgc
ctggaacagaactaccgctccaccgccggcatcctcaaggccgccaacgccctgattgcc
aacaataccgggcgcctgggcaaggaactgtggaccgacggcagcgaaggcgaggcgatc
aatctctacgccgccttcaacgaacacgatgaggcccgctatgttgtggaaaccatcgag
agcgcgttgaagaccggcctggcccgcagcgacatcgccatcctgtatcgctccaacgcc
caatcacgggtgctggaagaagccctgctgcgcgaacggattccttaccggatctatggc
ggccagcgcttcttcgagcgcgccgaaatcaagaacgccatggcctacctgcgcctgatc
gaaggccgtggcaacgacgcggccctggagcgggtgatcaacgtgccgacgcggggcatc
ggcgagaaaaccgtcgaggcgattcgcgagcatgcccgccacagccatgtgtcgatgtgg
gaagcgatgcgtctgctggtcgacaacaaaggcgtcaccggtcgcgccgccggcgcgctg
aaggccttcatggatttgatagaagacctggctgccaagtgtggggaaatgccactgcac
ctgatgacccagaccgtcatcgagcaatccggcctgatcgcctatcacgaagcggaaaaa
ggcgagaaaggccaggcccgggtggaaaacctcgaggaactggtcagcgccgcacgcaac
ttcgaaacgacggaagaagacgaagacctttcgccattgtcggctttcctcggccatgct
tccctggaggccggcgacacccaggccgacgagcatgaagacagcatccagctgatgacc
ctgcacagcgccaagggcctggaattcccgtatgtgttcctggtgggcatggaggaaggc
ctgtttccccacaagatgagcctggaagaacccggacgcctggaagaggaacgccgcctt
gcctacgttggcatcacccgcgccatgcagaacctggtgatgacctacgcggaaactcga
cgcttatatggcagcgaaacctacaacaaggtgtcgcgcttcgtacgcgaagtaccgaaa
ggtctcattcaggaagtccgtctttccaacagcgtcagccgtccgttcggcggcagccag
caacaaagcagcagcctgttcggtggcagcgatatcccggaaaccggcttcagccttggc
caggcggtacggcattcggtgttcggcgacggtgtgatcctcaacttcgagggcgccggt
gcccaggctcgggtccaggtcaacttcagcgaaggcagtaaatggctgatgctggggtat
gccaagctcgaggcgatctaa
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