Pseudomonas cavernae: D3880_14230
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Entry
D3880_14230 CDS
T08208
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pcav
Pseudomonas cavernae
Brite
KEGG Orthology (KO) [BR:
pcav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcav03032
]
D3880_14230 (topA)
03400 DNA repair and recombination proteins [BR:
pcav03400
]
D3880_14230 (topA)
Enzymes [BR:
pcav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
D3880_14230 (topA)
DNA replication proteins [BR:
pcav03032
]
Prokaryotic type
DNA Topoisomerases
D3880_14230 (topA)
DNA repair and recombination proteins [BR:
pcav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
D3880_14230 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AYC33443
UniProt:
A0A385Z639
LinkDB
All DBs
Position
complement(3122474..3125083)
Genome browser
AA seq
869 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAKRGKAAAGEA
PVLSPKEKAKRQLFTRMGVDPEHGWKAKYEILPGKEKVIDELRRLAKDADTIYLATDLDR
EGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSQPGELDINRVNAQQARRFLDRV
VGYMVSPLLWQKIARGLSAGRVQSVAVKLVVEREKEIRAFVPEEYWEIHADLGTAKGANV
RFEVARQNGEAFKPLNESQATAALEKLKASSYSVIKREDKPTSSKPSAPFITSTLQQAAS
NRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVEMARGFIEGEFGKKYLPAKPIV
YSSKEGAQEAHEAIRPSDVNLKPTQLSGMERDAERLYDLIWRQFVACQMPPAEYLSTSVS
VKASEFELRAKGRILKFDGYTRVLPQQSKPGDDDVLPEMNEGEVLKLLKLDPSQHFTKPP
ARYSEASLVKELEKRGIGRPSTYAAIISTIQERGYVTVHNRRFYSEKMGDIVTERLSESF
SHLMDYGFTAGMEEHLDDVAQGERDWKHLLDEFYGDFKKKLELAETSDSGMRANQPTLTD
IHCRECGRPMMIRTASTGVFLGCSGYALPPKERCKATVNLIPGDEIAADDEGESESRVLL
GKHRCPVCSTAMDAYLLDEKRKLHICGNNPDCSGYEIEEGQYRIKGYEGPSLECDKCGSE
MQLKTGRFGKFFGCTNASCKNTRKLLKSGEAAPPKIDPIKMPELKCEKVNDTYVLRDGAS
GLFLAASQFPKNRETRAPLVLELIPHKDELDAKYHFLLEAPKKDPEGRPAVIRFSRKTKE
QYVQSEVEGKPTGWRAFYSGGAWKVEDKR
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcatcgtggaatccccggccaaggccaagaccatcaacaagtat
ctgggcaaccagtacgtggtgaagtcgagcatcggccatatccgtgacctgcctaccagc
ggttcggccagtgccagcaaagagccagccaagcgcggcaaggctgctgcaggcgaggca
ccggtgctgtcgcccaaggaaaaagccaagcgccagttgttcacgcgcatgggcgtcgat
cccgagcatggctggaaagccaagtacgagatcctgcctggcaaggaaaaggtgatcgac
gaattgcgccgcctggccaaggatgccgacaccatctatctcgcaaccgacttggatcgc
gaaggggaggccatcgcttggcacctgcgcgaagccattggtggcgatgacagccgctac
aagcgcgtggtgttcaatgaaatcaccaagaaggcgatccaggaagcgttctcgcaaccg
ggcgagctggatatcaaccgagtcaacgcccagcaggcgcgacgtttcctcgatcgcgtg
gtgggttacatggtttcccctctgctgtggcagaagatcgcccggggcctttccgccggc
cgcgtgcagtcggtagccgtgaagctggtcgtcgagcgcgagaaagaaattcgcgcgttc
gtgcctgaagaatactgggagatccatgcagatctgggcacggccaagggcgccaacgtg
cgcttcgaagtcgctcggcaaaatggcgaagcattcaagccgctgaatgaatcccaggcc
accgccgcgctggagaagctcaaggcgtccagctatagcgtgatcaagcgcgaagacaag
ccgaccagcagcaagccttccgcaccttttattacctccacgttgcagcaagcggcgagt
aaccgcctcggcttcggcgtgaagaagaccatgatgatggcccagcgtctctacgaggcc
ggctatatcacctatatgcgtaccgactcgaccaacctctcgcaggatgccgtagagatg
gcgcgtggctttatcgagggtgagtttggtaagaaatatctgccggccaagccaattgtc
tattcgagcaaagagggcgcccaggaggcgcacgaggcgattcgcccgtccgacgtcaac
ctcaagccgactcagctgtccggcatggagcgcgatgccgagcgcctgtatgacctgatc
tggcgccaattcgtcgcctgccagatgccgccggcggaatatctgtccaccagcgtcagc
gtcaaggcgagcgagtttgaactgcgcgccaagggtcgcatcctcaagttcgacggttac
acccgcgtgctgccgcaacagagcaagcccggcgatgacgacgtgctgccggagatgaac
gaaggcgaagtgctcaagctgctcaagctcgaccccagtcagcacttcaccaagccgccg
gcgcgctattccgaagccagcctggtcaaggaattggagaagcgtggcatcggccggccg
tcgacctatgcggcgatcatctcgaccatccaagagcgcggctatgtgaccgtgcataac
cgccgtttctactcggagaagatgggcgacatcgtcaccgagcgcctgagcgagagtttt
tctcatctgatggattacggtttcaccgccggtatggaagagcatctcgatgatgtcgcc
cagggcgagcgtgactggaagcacctgctcgacgagttctatggcgacttcaagaaaaag
ctcgagctggccgaaactagcgacagcggcatgcgcgccaaccagccgaccctgaccgat
attcactgccgcgaatgcggccggccgatgatgattcgtaccgcttccaccggcgtgttc
ctcggctgctccggttacgcgctgccgccgaaagaacgctgcaaggcgaccgtcaacctg
attccgggcgacgagatcgccgccgatgacgagggcgaatcggagtcgcgcgtgttgctc
ggcaagcatcgttgcccggtctgcagcacggcaatggatgcttatctgctcgacgagaag
cgcaagctgcatatctgcggcaacaacccggattgttccggctatgaaatcgaggaaggg
cagtaccgcatcaagggctacgaaggcccgagcctggagtgcgacaagtgcggcagcgag
atgcagttgaagactggtcgcttcggcaagttcttcggttgcaccaatgcgtcctgcaag
aacactcgcaagctgctgaagagcggcgaggccgcgccgccgaagatcgacccgatcaag
atgccagagctcaagtgcgagaaggtcaacgacacttatgtgctgcgtgacggcgcttcc
ggcctgttcctggccgccagccagttcccgaagaaccgcgagacccgtgcgccgctggtg
ctcgagctgattccacacaaggatgagctggatgcgaaatatcacttcctgcttgaggcg
ccgaagaaggatccggaagggcgtccagcggtgatccgtttcagccgcaagaccaaggag
caatacgtgcagtccgaggtggagggcaagccgaccggctggcgcgccttctacagcggt
ggcgcctggaaggtcgaagacaagcgctaa
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