Pseudomonas carboxydohydrogena: AFIC_002689
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Entry
AFIC_002689 CDS
T08963
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
pcax
Pseudomonas carboxydohydrogena
Brite
KEGG Orthology (KO) [BR:
pcax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcax03021
]
AFIC_002689 (rpoH)
Transcription machinery [BR:
pcax03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AFIC_002689 (rpoH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
HTH_3
HTH_11
KORA
HTH_7
GntR
HTH_23
HTH_28
GP3_package
HTH_Crp_2
HTH_20
Motif
Other DBs
NCBI-ProteinID:
WEF51121
LinkDB
All DBs
Position
2782181..2783080
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AA seq
299 aa
AA seq
DB search
MARAATLPVLNGESGLSHYLAEIRKFPMLEPQEEYMLAKRWREHDDRDAAHRLVTSHLRL
VAKIAMGYRGYGLPISEVVSEGNVGLMQAVKRFEPEKGFRLATYAMWWIKASIQEYILRS
WSLVKMGTTANQKKLFFNLRKAKSKISALEEGDMREDQVKLIAKRLGVTERDVIDMNRRL
GGDASLNAPIRDDGEPGEWQDWLVDTSPNQEAIMAESEEYDHRRNALTGAMGVLNPRERR
IFEARRLAEEPMTLEDLAAEFGVSRERVRQIEVRAFEKVQAAVKSTVARQEQAALEAAY
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtgcagccactttgccggttctcaacggagagtccggtctttcccattacctc
gccgaaatccgcaaattccccatgcttgaaccgcaggaggaatacatgctcgccaagcgt
tggcgcgagcatgacgatcgggatgcggcgcatagactcgtaaccagccatctgcggctc
gtggcgaagatcgccatgggctatcgcggctacggcctgccgatctccgaggtcgtctcg
gaaggcaatgtcggcctgatgcaggcggtgaagcgcttcgagcccgaaaagggattccgc
ctcgccacctacgcgatgtggtggatcaaggcgtcgatccaggaatacatcctgcgttcg
tggtcgctcgtgaaaatgggcaccaccgcgaaccagaagaagctgttcttcaacctgcgc
aaggccaagagcaagatctcggcgctggaagaaggcgacatgcgcgaggatcaggtcaag
ctgatcgccaagcgtctcggcgtcaccgagcgcgacgtgatcgacatgaaccgccgcctt
ggtggcgacgcctcgctcaatgcgccgatccgcgacgacggcgaacctggcgaatggcag
gattggctggtcgatacctcgcccaaccaggaagccatcatggcggagagcgaggaatac
gatcaccgccgcaacgcgctgaccggcgcgatgggcgtgctcaatccgcgcgaacgccgc
atcttcgaggcgcggcgcctggccgaagagccgatgacgctcgaggacctcgccgccgaa
ttcggcgtctcgcgcgagcgcgtgcgccagatcgaggtccgcgctttcgagaaggtgcag
gccgcggtgaagagcaccgtggcgcgccaggagcaggcggcactcgaggccgcttactga
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