KEGG   Pseudomonas chengduensis: QYM18_17790
Entry
QYM18_17790       CDS       T09586                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pche  Pseudomonas chengduensis
Pathway
pche02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pche00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    QYM18_17790
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pche03021]
    QYM18_17790
Transcription machinery [BR:pche03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     QYM18_17790
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 HTH_23 Sigma70_ECF Rv2175c_wHTH HTH_24 HTH_29 HTH_IclR MerR Sigma70_r3 HTH_31 TnsD HTH_17 HTH_AsnC-type GerE HTH_5 HTH_10 HTH_3 FaeA HTH_28 HTH_11 Fe_dep_repress Phage_terminase HTH_38 DNA_pol3_delta_C
Other DBs
NCBI-ProteinID: WKC36297
LinkDB
Position
complement(3814352..3814870)
AA seq 172 aa
MSVQDSSNQQLVGLLYRDHRDWLFGWLRKSLNCAQRAEDLSQDTFVRLLGRADLHSPREP
RALLTTIAKGLLVDQFRRHALERAYLEELALAPQAVQPSPEEQALALEQLAEIDRLLGQL
SSKARAAFLYNRLDGLGHAEIAERLGVSPSRVRQYLAQGMRQCYIALYGAPQ
NT seq 519 nt   +upstreamnt  +downstreamnt
gtgtcggttcaggattccagcaatcagcagctggtcggtctgctttatcgcgatcaccgt
gactggctgttcggctggctgcgcaaaagcctgaactgcgcgcagcgcgccgaagacctg
agtcaggacaccttcgttcgcctgctcggtcgcgccgacctgcacagcccgcgcgagccc
agagccctgctcaccaccatcgccaaggggctgctggtagaccagtttcgccgccatgcg
ctggaacgtgcctatctggaagagctcgcgctggctccgcaagccgtgcaacccagcccg
gaagaacaggccctggccctggagcaactggccgagatcgatcgcctgctcggtcagctg
tcgagcaaggcacgcgcagctttcctctataaccgtctggatggcctcggtcatgccgag
atcgccgagcgccttggcgtctcgccgtcgcgcgtgcgtcaatacctcgcccagggaatg
cgccagtgctacatcgcgctgtacggagcgccgcaatga

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