Pseudomonas chlororaphis subsp. piscium: C4K32_2039
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Entry
C4K32_2039 CDS
T09060
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pchp
Pseudomonas chlororaphis subsp. piscium
Brite
KEGG Orthology (KO) [BR:
pchp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pchp03032
]
C4K32_2039
03400 DNA repair and recombination proteins [BR:
pchp03400
]
C4K32_2039
Enzymes [BR:
pchp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
C4K32_2039
DNA replication proteins [BR:
pchp03032
]
Prokaryotic type
DNA Topoisomerases
C4K32_2039
DNA repair and recombination proteins [BR:
pchp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
C4K32_2039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AZC68711
LinkDB
All DBs
Position
2183469..2186081
Genome browser
AA seq
870 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASAAKEPAAKRGKAAAGE
APALSAKEKARKQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGAN
VRFEVARENGEAFKPLNEAQAMAALEKLKASTYTIAKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALTMARTYIEEEFGNKYLPSSPN
FYSSKEGAQEAHEAIRPSDVNTHPSKLSGMERDAERLYELIWRQFVACQMLPAQYLSTTV
SVAAGGFELRAKGRILKFDGYTRVMPQMSKPGDDDVLPDMAQGDVLKLIKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEEHLDDVAQGERDWKNVLDEFYGDFKKKLEVAEGSDSGMRANQPVMT
DIPCLTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCAGYEIEEGSYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVLELIPHKDEIDPKYHFLCEAPKKDPEGRPAVIRYSRKTK
EQYVQTEVDGKPTGWRAFYDAGSWKVEDKR
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtac
ttgggtaaccaatacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagt
ggttcggcgagcgccgccaaagagcctgccgccaagcgtggcaaggcggctgctggtgaa
gcaccggcgctgtcggccaaggagaaggcgcgcaagcagctggtctcgcgcatgggagtc
gatccggaccacggctggaaagccaagtacgagatccttccaggcaaggaaaaagtcatc
gaagagctgcgccggctcgccaaggatgctgacaccatctatctcgcaacggacttggac
cgcgaaggggaagccattgcctggcacctgcgggaagccattggtggggatgacagccgc
tacaagcgcgtggtgttcaacgaaatcaccaagaaggcgatccaggaagccttctcccag
ccgggcgagctggatatcgatcgagtcaacgctcagcaggcgcgtcgcttcctcgaccgc
gtggtgggctacatggtttcgccgctgctgtgggccaaaatcgcccgtggcttgtctgcc
ggtcgcgtgcaatcggtggcggtgaagctggtggtggagcgtgagcgcgagattcgtgcc
ttcatccctgaagaatactgggaagttcacgccgacctcggcaccgccaagggcgccaat
gtgcgcttcgaagtggcccgtgaaaacggcgaagccttcaagccgctgaacgaagcccag
gccatggcggcgctggagaagctcaaggcttcgacctacaccatcgccaagcgtgaagac
aaaccgaccagcagcaagccatcggccccgttcattacttccaccctgcaacaggccgcg
agcaaccgcctgggcttcggggtgaagaaaaccatgatgatggcccagcgtctgtatgaa
gccggctacatcacctatatgcgtaccgactcgaccaacctctcggctgatgccctgacg
atggcgcggacctatatcgaagaagagttcggcaacaaatacctgccgtcctcgccgaac
ttctacagtagcaaggaaggggcccaggaggcgcacgaagcgattcgtccgtccgacgtg
aacacccacccaagcaaactgtcgggcatggagcgtgacgctgagcgcctctacgagctg
atctggcgccagttcgtggcctgccagatgctgccggcgcaatacctgtcgaccaccgtc
agcgtcgccgctggtggcttcgagctgcgtgccaagggccgtatcctcaagttcgacggt
tacacccgggtcatgccgcagatgagcaagccgggcgacgacgatgtcctgccggacatg
gcgcagggcgatgtgctgaagctgatcaagctcgacccgagccagcacttcaccaagccg
ccggcgcgttactccgaagccagcctggtcaaggaaatggaaaaacgtggcatcggtcgt
ccttcgacctacgcggcgatcatttccaccatccaggaccgtggctacgtggcgctgcac
aaccgtcgcttctattcggaaaagatgggcgacatcgtcaccgagcgtctgtccgagagc
ttctccaacctgatggactacggcttcaccgccggcatggaagagcacctcgatgacgtg
gcccagggcgagcgcgactggaaaaacgtcctcgacgagttctacggcgatttcaagaag
aagctcgaagtggccgaaggcagcgacagcggcatgcgcgccaaccagccggtgatgacc
gatatcccgtgcctcacctgtggtcgtccgatgcagattcgtaccgcgtccaccggtgtg
ttcctcggttgctcgggttacagcctgccgccgaaagagcgctgcaaggctaccgtcaac
ctggtgccgggcgacgagatcgccgcggacgacgagggcgagtccgaatcgctggtactg
cgtggcaagcaccgttgcccgatctgcagcacggcgatggatgcctatctgctggacgag
aaacgcaagctgcacatctgcggcaacaacccggattgcgcgggctacgagatcgaagag
ggcagctaccgcatcaagggctacgaaggtccgagcctggaatgcgacaagtgcggcagc
gagatgcagctcaagaccggtcgtttcggcaagttcttcggttgcaccaacccgacctgc
aagaacacccgcaagctgctcaagagcggtgacgcggcgccgccgaagatggatccggtg
aagatgcccgagctgaaatgcgagaaggtcaacgacacctacatcctgcgcgacggagcc
tcgggtctgttcctggcggccagccagttcccgaaaaaccgtgagacccgcgcaccgctg
gtgctcgagctgatcccgcacaaggacgagatcgatccgaagtatcacttcctctgcgaa
gcgccgaagaaggaccctgagggccgtccggcggtgatccgctacagccgcaagaccaag
gagcagtacgtgcagaccgaagtcgacggcaagccgaccggctggcgtgcgttctacgac
gctggtagctggaaagtcgaagacaagcgttaa
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