Pontibacillus chungwhensis: QNI29_19890
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Entry
QNI29_19890 CDS
T09116
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pchu
Pontibacillus chungwhensis
Pathway
pchu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pchu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QNI29_19890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pchu03400
]
QNI29_19890
Enzymes [BR:
pchu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QNI29_19890
DNA repair and recombination proteins [BR:
pchu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QNI29_19890
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
WIF97959
LinkDB
All DBs
Position
3916673..3918517
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AA seq
614 aa
AA seq
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MMKRVNQEGLGTLVEKEVLMLKPMLPTLTEDTPEGPSWVYEVKYDGFRALLHWTKENVTL
TSRNGNDLTDQFPEIIKAIADQTPSVKNELPLLLDGEICILTTSIQSQFSLLQKRNRMRS
KDPINQAAAERPATFVAFDLLKQNNETYMSQSYQERRKRLGKWKDCVHIVDSYSNLKDIQ
ELVFLHRGEGIVAKNKKSTYKPGERSNDWLKIKNWRVIQTVLTAYKPENGYFHAAVYKGD
NLVDVGSVKHGLSTEGQQTLQTFFTNKGQKSGDLYTLQTGVCVGVRCLHAQKNDLREPMF
DSFLLELSPEDCTLDQMEWDLSLFPQMEYTNLDKTLWPGPPFQKRDLLMYLRKVAPYLLP
FVKDKKLTVIRFPEGIDEESFFQKHLPDYAPMFVNRLEGSEETYMICNDLPTLLWHGNQG
AIEYHLPFEKVDETAPDEIVFDLDPPEREAFPLAIKAATLLKTIFDRLELLTFVKTSGGK
GMQVHIPIQPGSLTYEETRAFTEKVAQLVIGQHPDLFTTERLKKNRGNRLYIDYVQHAEG
KTIISPYSPRGREGATVATPLYWEEVKETLDPSSFHIGNTLDRLEEIGCPFASFHETREA
QNLQLVKKLIEEES
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaacgagtaaatcaggaagggttaggtacactagtggaaaaggaggttcttatg
ctaaaacctatgcttccaacgctcactgaagatactcccgaaggaccgtcatgggtgtat
gaagtgaaatatgatggtttccgcgcattactccattggaccaaggaaaacgttactcta
acaagtcgaaatggaaatgacctaaccgatcagttcccagaaattattaaagcaatagcc
gatcaaacgccatccgttaaaaacgaactcccccttttgcttgacggtgaaatctgtatc
ctcacgacttctattcaaagtcaattctcactcttgcaaaagcggaacagaatgcgaagt
aaagatcctataaatcaagccgcagcggaacgccctgccacctttgtcgcgttcgacctt
cttaaacaaaataacgaaacctacatgagccagtcttatcaagaaaggcgcaaaagactg
ggaaagtggaaagactgtgtacacattgtggacagctactccaatttaaaagacattcaa
gagcttgttttcttgcacagaggagaaggaattgtagcaaagaacaagaaaagtacctat
aaacctggtgaacggagcaatgattggcttaagattaaaaattggcgagtgattcaaacg
gtgcttaccgcttataaaccagagaacggctatttccatgcagctgtgtataaaggggat
aaccttgtggatgtgggttctgtgaaacacggtctgtccacagagggtcaacaaactctt
caaactttctttacaaataaaggacaaaaatccggagatctctatacgctccaaacgggt
gtctgcgtaggagttcggtgcctccatgctcagaaaaatgatttacgagagccgatgttt
gattcatttttactagagttatccccagaagactgtaccttggatcaaatggagtgggat
ttatccctttttccacaaatggagtatacgaatcttgataaaaccctttggcctgggccg
ccttttcaaaagcgagatctgttgatgtatttacgaaaagtagctccttatcttttgcct
tttgtgaaggataagaagttaacggtgattcgctttcctgaggggatcgatgaggaatcc
ttcttccaaaagcacttgccagactatgcgccaatgtttgttaaccgactagagggatct
gaggagacttatatgatctgtaacgacctccccacgcttctctggcatgggaatcaagga
gctattgagtatcaccttccatttgaaaaagtggatgaaacagcaccagatgagattgtc
tttgaccttgacccacctgaacgggaggccttccctctcgcgatcaaagccgctaccctt
ttaaaaaccatatttgatcggctcgaactactgacttttgttaagacaagcggcggaaaa
ggcatgcaagttcatattcctatacagcctggaagcttaacgtatgaagaaacccgtgca
ttcactgagaaggtcgctcaattggtgatagggcaacatcccgacctgtttacaaccgaa
cgcttaaaaaagaatcggggcaaccgcctctacattgactatgttcagcatgctgagggt
aagaccattatctccccctattcccctcgaggtcgggagggcgcaactgtagcaacaccg
ctttactgggaggaagtcaaggagacattagatccttcctctttccatatcggaaataca
ttagatcgcctcgaagaaataggatgtccattcgcttctttccatgaaacacgagaagcc
cagaacttacagctcgttaagaaattgattgaagaagaatcgtga
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