Pseudomonas coronafaciens pv. oryzae: POR16_11020
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Entry
POR16_11020 CDS
T08147
Symbol
hcp
Name
(GenBank) type VI secretion system tube protein Hcp
KO
K11903
type VI secretion system secreted protein Hcp
Organism
pcof
Pseudomonas coronafaciens pv. oryzae
Pathway
pcof02025
Biofilm formation - Pseudomonas aeruginosa
pcof03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
pcof00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
POR16_11020 (hcp)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
POR16_11020 (hcp)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pcof02044
]
POR16_11020 (hcp)
Secretion system [BR:
pcof02044
]
Type VI secretion system
Imp/Vas secretion system core components
POR16_11020 (hcp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
T6SS_HCP
Importin_rep_5
DUF5765
Motif
Other DBs
NCBI-ProteinID:
QGL56849
LinkDB
All DBs
Position
complement(2421666..2422181)
Genome browser
AA seq
171 aa
AA seq
DB search
MPTPAFLTVIGKVQGLITKNASSVESVSGASRTDHIDESMIQALSHEIISPYDRQSGSST
GPRIHGPLCLTKSFDSASPLLLQALVKGEELEKVEIRWYRMSGSKEEHYYTTTLEDAKIV
AIKDYMPSCQDPGNSHFTHLQEVHFSYRDITWNHVAASTTGSDQWDKSKMD
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
atgcctacacccgcgttccttacagttattggcaaagttcaaggccttatcacaaaaaat
gcatccagcgttgaatcagtctctggagcctcccgaaccgatcatatagacgaatccatg
attcaggccttgagccatgaaataatatctccttacgatcgccagtcaggcagcagcaca
ggcccgcgcatacatggccctctttgccttacaaaatcttttgacagtgcatcaccgctg
ctgctacaggctttggtcaaaggggaagaactggagaaagttgaaataagatggtaccgg
atgtcgggaagcaaagaggagcattactacaccaccactcttgaagatgccaagattgtg
gccataaaagactacatgcccagctgtcaggatcctggcaattcacatttcacacacttg
caagaggtgcacttcagttatcgcgacattacgtggaatcacgtagcggccagcacgacc
ggctctgatcagtgggataagtccaagatggattga
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