Pseudomonas coronafaciens pv. oryzae: POR16_14995
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Entry
POR16_14995 CDS
T08147
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pcof
Pseudomonas coronafaciens pv. oryzae
Brite
KEGG Orthology (KO) [BR:
pcof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcof03032
]
POR16_14995 (topA)
03400 DNA repair and recombination proteins [BR:
pcof03400
]
POR16_14995 (topA)
Enzymes [BR:
pcof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
POR16_14995 (topA)
DNA replication proteins [BR:
pcof03032
]
Prokaryotic type
DNA Topoisomerases
POR16_14995 (topA)
DNA repair and recombination proteins [BR:
pcof03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
POR16_14995 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
QGL57552
LinkDB
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Position
complement(3342909..3345521)
Genome browser
AA seq
870 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASAAKDPAAKRGKAAAGE
GPVLTPKEKAQRQLVSRMGVDPEHGWKAKYEILPGKEKVIEELRKLAKDADIIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSKPGELDIARVNAQQARRFLDR
VVGYMVSPLLWQKVARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEIHADLGTAKGAN
VRFEVAREKGEAFKPLNEAQAMAALEKLKASTYSIIKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVSMARDYIGTEFGKKYLPETPN
VYSSKEGAQEAHEAIRPSDVNTHPSKLTGMERDAERLYELIWRQFVACQMLPAQYLSTTV
TVAASDFELRAKGRILKFDGYTRALPQMAKPGDDDVLPDMVQGEVLKMNKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTGRLAES
FSNLMDYGFTAGMEENLDDVAKGQRDWKNVLDEFYGDFRKKLEVAEAPDSGMRANQPVMT
DIPCKVCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLTPGDEIADDDEGESESRVL
RGKHRCPICSTAMDAYLLDEKHKLHICGNNPDCTGYEIEEGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPDCKNTRKLLKSGDAAPPKMDPVKMPELKCDKVDDTYILRDGA
SGLFLAASQFPKNRETRAPLVVEIAPHKDEIDPKYHFLCEAPKKDPDGRPTVIRYSRKTK
EQYVQTEVEGKPTGWRAFYDGSAWKVEDKR
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcatcgtggaatccccggctaaggccaagaccatcaacaagtat
ttgggcaaccagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagtgctgccaaagatcctgccgccaagcgtggcaaggccgctgcgggcgaa
ggcccggtactgacgccgaaagaaaaagcgcagcgccagctggtctcgcgcatgggggtt
gacccggaacacggctggaaagccaaatacgagatccttcccggcaaggagaaggtcatc
gaagagctgcgcaagctcgccaaggatgccgacatcatctatctcgcgacggacttggac
cgcgaaggggaagccattgcctggcacctgcgcgaagccatcggcggagatgacagtcgc
tacaagcgtgtggtgttcaacgaaatcaccaagaaggctatccaggaagcgttttccaag
ccgggtgagctggacatcgcacgagtcaatgctcagcaggcgcgccgttttcttgaccgc
gttgtcggctacatggtctcgcctctgttgtggcagaaagtcgctcgagggttgtctgcc
gggcgcgtgcaatcggttgccgtgaagctggtggtagagcgtgagcgagaaattcgcgcc
ttcaacccggaagaatactgggaaatccacgccgaccttggcaccgcaaaaggcgccaat
gtgcgctttgaagtagcgcgggaaaaaggcgaagcgttcaagccgctgaacgaagcccag
gccatggccgcccttgaaaagctcaaggcgtccacctacagcatcatcaagcgtgaagac
aaaccgaccagcagcaagccgtcggcaccgttcattacctcgactctgcaacaggccgcc
agcaaccgtctgggcttcggcgtgaagaagaccatgatgatggcgcagcgcttgtacgag
gcgggctacatcacctacatgcgtaccgactcgaccaatctctcggccgatgccgtcagc
atggcgcgcgactatatcggaaccgaattcggcaagaaatacctgccggaaacgccgaat
gtctacagcagcaaagagggcgcacaagaggcgcacgaagcaattcgaccttccgacgtc
aacacccatccgtcaaaactgaccggcatggagcgtgatgcagagcgtctttacgagttg
atctggcgtcagttcgtggcctgccagatgctgcctgcgcaatacttgtcgaccaccgtc
accgtggctgccagcgatttcgaactgcgtgccaagggccgtatcctgaaattcgacggc
tatacccgtgcattgccgcaaatggccaagccaggcgatgacgacgtgctgccagacatg
gttcagggcgaagtcctgaaaatgaacaagcttgacccgagtcagcatttcaccaagccg
cctgcgcgctactccgaagccagtctggtcaaggagatggaaaaacgcggtatcggtcgt
ccttcgacctatgcggcaatcatctcgaccattcaggaccgtggctacgtggcgctgcac
aatcgccgcttctattcggaaaagatgggcgacatcgttactggacgcctggctgaaagt
ttctccaacctgatggactacggtttcaccgccgggatggaggagaatctcgatgatgtc
gccaaggggcagcgtgactggaaaaacgtgctggacgagttctacggggatttccgcaaa
aaactggaagtagccgaagcgccggacagcggtatgcgcgccaatcagccggtgatgacc
gatatcccgtgcaaagtgtgcggtcgaccgatgcagatccgtaccgcctcgaccggcgtg
tttctcggctgctcgggttacagcctgccacccaaggagcgctgcaaggcgacggtcaat
ctgaccccgggtgacgagattgccgatgatgacgagggcgagtcagagtcacgtgtactg
cgtggcaagcatcgctgcccgatctgcagcactgcgatggatgcctatctgctcgacgag
aaacacaaactgcatatatgcggtaacaacccggattgcacgggttacgagatcgaagag
ggtacttatcgcatcaagggctatgaaggtccgagccttgagtgcgacaagtgcggcagc
gagatgcagctcaagaccggtcgtttcggcaagttcttcggctgtaccaatcctgattgc
aagaacacccgcaaactgttgaaaagcggcgacgcggctccaccgaaaatggacccggtg
aaaatgccggagctaaagtgcgacaaggtcgacgacacctatattctgcgcgacggtgct
tcaggtctgtttctggctgccagtcaatttccgaaaaaccgcgaaacccgcgcaccgttg
gtcgtcgagattgcgccgcacaaggacgagatcgatcccaagtatcacttcctttgtgaa
gcgccgaaaaaggatcctgatggccgtcctacggtgatccgctacagtcgcaagaccaaa
gagcaatatgtccagactgaagtggaaggcaagcctaccggctggcgcgcgttctacgac
ggcagcgcatggaaggttgaagacaagcgttga
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