Pandoraea commovens: NTU39_03755
Help
Entry
NTU39_03755 CDS
T08365
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pcom
Pandoraea commovens
Pathway
pcom03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pcom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NTU39_03755 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcom03400
]
NTU39_03755 (ligD)
Enzymes [BR:
pcom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NTU39_03755 (ligD)
DNA repair and recombination proteins [BR:
pcom03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NTU39_03755 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UVA80151
LinkDB
All DBs
Position
complement(734388..736874)
Genome browser
AA seq
828 aa
AA seq
DB search
MPRRASTKPTNSTSAKPDRRRKSGDPLAAYDAKRDFSATPEPRGKRSARKHALRYVVQRH
DASHLHYDFRLELDGTLRSWALPKQPSPDVSRPRLAVQVEDHPLAYADFEGDIPAGNYGA
GHVDIWDRGTWIPDGNASRDYAHGKLSFTLQGERLSGHWTLVRTDKPARQPQWLLIHRHD
DGHASAHAKPPTSKPATSRRSSIKPPDEVRPMLATLVDQAPSSEGWHAELKLDGYRVLIR
IAGSDIRVFTRSGQDWTHRFQPAVAALRERGLPNAWLDGEAVVTNERGLPDFQALQRAFD
EDAQSAIVIYVFDLPWCNGKDLRDAPLHERQARLASMFEGKETDAVRVLRPIAGDLGSLW
HGACEAGLEGIMVKRDDSTYVDGRSDAWRKLKCSQRQEFVVVGFTEPSGSRQGFGALLLG
YYDDDGKTLRYAGKVGTGFDTEALLRMRKQLDAIETPRPSLSPAPRPGGRARVHWLRPTL
VAEVRFAEWTRDGHVRQASFHAMRTDKPAKEIRRETRRSGAVDSSKEMPSMPKSSALPVK
ITHGERVMDTHSGVTKVELAEYYAAVSQWMLPHLADRPVAVLRAPEGIGGEMFFQKHAAK
TITGVHVLDPSLDPDHEPLMQIIDTRGLVGAVQMGSVEFHTWNARSDLIERPDRVIFDLD
PGKGVTFAQIVEGAQLIRGLLDELGLKAFVKTSGGKGLHVVTPLARRHEWDFAKGFAEAV
AKHMAHVFPDRFTATMGPKHRVGKCFIDYLRNYRGATTVCAYSARAREGMAVSMPVHWEE
LSELPGADAWTVRNALDRLTALKQDPWAEYEKASQQRVTKTMLDRLRD
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgccgagacgcgcctcaactaagccgaccaactcgacgagcgcgaagccggatcgccgt
cgcaaatccggcgatccgctcgcggcgtacgacgcaaaacgcgacttctccgccacaccc
gagccgcgcggtaagcgttcagcccgcaagcatgcgttgcggtatgtcgtccaacggcat
gacgccagccacctccactacgacttccgtctggaactcgacggcaccctgcgttcatgg
gctctgccgaagcaaccgagtccggatgtcagccgtccgcgactggccgttcaggtcgaa
gaccatccgctcgcttacgccgacttcgaaggcgacattcccgctggcaactacggtgcg
gggcacgtcgacatctgggatcgaggcacctggatacctgacggcaatgcatcgcgcgat
tatgctcacggtaagttgtcgttcacattacaaggcgaaagactcagcggtcactggacg
ttggtgcgtaccgataagcccgcgcgtcagccgcaatggctattgattcaccggcatgac
gacgggcatgcatcggcgcatgccaaaccgccgacgtcgaagcctgcgacatcacgcaga
tcctcgatcaagccgcccgacgaggtgcgtccgatgctggcgacgctagtcgatcaggcg
ccttcatccgagggatggcacgccgagttgaagctcgacggatatcgcgtcctgatccgc
atcgcgggcagcgacattcgcgtcttcacgcgctcgggtcaggattggacgcaccgattc
caacccgcagtggccgccttacgcgaacgcggcctcccgaacgcgtggctcgatggcgag
gccgtcgtcacaaacgagcgcgggttgccggactttcaggcgttgcaacgagcgttcgac
gaagacgcccagagcgccatcgtcatctacgtcttcgatctgccgtggtgtaacgggaag
gatctgcgcgatgcgccattgcatgagcgtcaggcgcgactcgcgagtatgtttgaaggc
aaagagacggatgccgtgcgggtccttcgacctatcgcgggcgatctcggatcgctctgg
cacggcgcatgtgaagcgggcctcgaaggcatcatggtcaagcgcgacgactcgacctac
gtcgacggccgcagcgacgcatggcgcaagctcaagtgctcgcagcgtcaggagttcgtc
gtagtggggttcacggaaccctccggctctcgacagggattcggtgcgctactgctcggc
tattacgacgatgacggcaagacgctgcgctacgcgggcaaggtcggcaccggcttcgat
accgaggcgctgctgcgcatgcgcaagcaactcgacgcgattgaaacgccgcgcccttcg
ttgtcccctgcaccgcgtccgggaggccgggcgcgtgtgcactggttgcgtccaacgctg
gtcgccgaagtacgcttcgccgagtggacgcgcgacggtcatgtgcgtcaggcgtcgttc
cacgctatgcgtaccgacaaaccggcgaaggagattcgccgcgagacgcgccgcagcggt
gccgtcgactcatcgaaggagatgccgtccatgccgaaatcgtccgcacttccggtgaag
atcacacacggcgaacgcgtgatggacacgcactcgggcgtgacgaaagtcgagctagcc
gagtattacgccgccgtcagccaatggatgctcccgcaccttgccgaccggccggtcgct
gtgctgcgcgcgccggaaggtatcggcggtgagatgttcttccagaagcatgcggcgaag
acgatcaccggcgtgcatgtgctcgatccgtcgctcgatccggaccacgaaccgctgatg
cagatcattgatacgcggggactcgtcggggccgtgcagatggggtcggtggagttccac
acgtggaatgcccgcagcgatctgatcgagcgtcccgatcgcgtgatcttcgatctggac
cccggtaagggggtgacgtttgcgcagatcgtggaaggcgcgcaactcattcgtggactg
ctggacgaactggggctgaaagccttcgtgaagacgagcggcggcaaagggctgcacgtg
gtgacaccattagcgagacgtcacgaatgggacttcgcgaaggggttcgcggaagctgtc
gcgaagcatatggcgcacgtgtttcccgaccggttcacggcgacgatgggaccgaagcat
cgcgtggggaagtgcttcatcgactatctgcgcaactaccgaggggcgactaccgtgtgc
gcatactcggcccgggcgcgagaaggcatggcggtatcgatgcctgtccattgggaggaa
ttgtccgaattgcccggcgccgacgcctggaccgtgcgcaacgccctcgatcgcctcacc
gcgttgaaacaagacccgtgggcggagtatgagaaggcatcgcagcagcgggtgacgaag
accatgctggatcggcttcgtgattag
DBGET
integrated database retrieval system
