Pseudarthrobacter defluvii: JCQ34_03275
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Entry
JCQ34_03275 CDS
T09165
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pdel
Pseudarthrobacter defluvii
Pathway
pdel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JCQ34_03275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdel03019
]
JCQ34_03275
03400 DNA repair and recombination proteins [BR:
pdel03400
]
JCQ34_03275
Enzymes [BR:
pdel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JCQ34_03275
Messenger RNA biogenesis [BR:
pdel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JCQ34_03275
DNA repair and recombination proteins [BR:
pdel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JCQ34_03275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
WJH25135
LinkDB
All DBs
Position
675047..677248
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AA seq
733 aa
AA seq
DB search
MANNQYASPVSAAAVATAGPDAPGTATHAEALEVLRGLVGNPGAVFHEGQFEAIEALVDG
GRRALVVQRTGWGKSAVYFVASLLLRRRGAGPTLIVSPLLALMRDQVAAAARAGVRAVAI
NSANQLEWDTVREQLAADEVDVLLVSPERLTNPAFRETQLPELLRRTGLLVIDEAHCISD
WGHDFRPDYRRIADLITRLPDSVPVLATTATANSRVVHDIEEQLGAGVLTIRGSLGRDSL
RLGVLSLPDSKARLGWLLTHLADLPGSGIIYTLTVSAAEDTARLLSEAGHNVLAYTGRTD
PADRERAEQLLKDNQVKALVATSALGMGFDKPDLGFVVHLGAPSSPVAYYQQVGRAGRGA
ANADVLLLPGSEDREIWQYFATASMPSEEKAAAVLTALAEAGTALSTVALEARVDLRRTP
LDLLLKVLSVDGAVERVGGGWRSTGQPWVYDAERYSRIAEARVDEQDSMVIYQDTAGCRM
EYITSVLDDETARPCGRCDNCAGRWFPADVAADATAAAGQTLSRAGGVLEPRLQWPSGMD
RLGVPVKGKLKPGEGLAEGRVLARLTDLGWGGALRELFAAGAEDRPVDPAMLQACVQVLR
EWGTGDSRNPGWSGAGRPAAIIGVPSRSKPQLVGSLARGISDIGRIPYLGELQLAHGGPT
GGRGGNSAYRLAGVWDRLVVGPELGAALQSVQGQSVMLIDDLADSRWTLTVAGRALRQAG
AGAVLPLVLAQAG
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggccaataaccagtacgcttccccagtttccgccgccgcagttgccacggcaggtccg
gacgcgcccgggaccgccacgcatgccgaggcgcttgaggtgcttcgcgggctggtgggc
aacccgggcgccgtcttccacgagggccagttcgaggccatcgaggcattggtcgacggc
gggcggcgagctttggtggtccagcgcaccggctggggcaagtcagccgtgtacttcgtg
gcgtccctcctgctgcggcgccgcggagccgggcccaccctgatcgtttcgcccctgctt
gccctgatgcgcgaccaggtggccgctgccgcccgggcgggggttcgcgccgtggccatc
aactccgccaaccagttggagtgggataccgtccgcgagcagctggccgccgatgaggtt
gatgtcctcctggtctccccggaacggctcaccaacccggcattccgggagacccagttg
cccgaactcctccgccgcaccgggctgctggtcatcgacgaggcccactgcatttccgac
tggggccacgacttccgtcccgattaccgccgcatcgcggacctcatcacgcggctgccg
gattcggtgccggtcctggccaccaccgccacggccaactcccgggtggtgcacgatatc
gaagagcagctcggtgcgggggtcctgaccatccgcggctccctgggccgtgactcgctg
cggctgggggtcctgtcgctgccggactccaaggcgcgcctgggatggctgctgacccac
ctggccgatcttcccggcagcggcatcatctacaccctgaccgtttccgctgcggaggac
accgccaggctgctgtccgaggcaggacacaatgtgcttgcctataccgggcggaccgat
ccggcggaccgggaacgggcagagcagctgttgaaggacaaccaggtcaaggcgctggtg
gccacttccgccctcggcatgggcttcgacaagccggaccttggcttcgtcgtccacctc
ggcgcgccgtcctcgccggtggcgtactaccagcaggtgggccgcgccggccgtggcgct
gccaacgccgatgtcctgctgctgccaggctccgaggaccgggaaatctggcaatacttc
gccaccgcgtccatgccgtcggaggagaaggcagcggccgtgctgacggcgctggccgag
gccggtaccgcgctgtcaacggtggccctggaggccagggtggaccttcgccgcacgccg
ctggatctgctgctgaaggtactgtcagtggacggcgctgttgaacgggtcggcggaggc
tggcggtccacgggccagccgtgggtttacgacgcggagcggtacagccgcatcgccgag
gcccgcgtggacgagcaggactccatggtgatctatcaggacaccgcaggctgccggatg
gaatacatcacctccgtcctggatgacgagacagcccgtccctgcggccgctgtgacaac
tgtgcgggccgctggttcccggcagacgttgccgcggacgctacagcggcggcaggccag
accttgagcagggcaggaggcgtcctggaaccgcggctgcagtggcccagcggcatggac
cgtttgggagttccggtgaaaggcaaactcaagccgggcgaaggcctggcggagggacgc
gtcctggcccggctgacggatcttgggtggggcggtgccctgcgggagctgtttgccgcc
ggtgcggaggaccggccggtggaccctgcgatgctccaggcatgtgtgcaggtcctgcgg
gaatggggaaccggggacagccggaacccgggttggagtggggcgggccggcctgccgcc
attattggtgtcccgtcgcggagcaagccgcagctggtgggctcactggcccggggaatc
tccgatattgggcgcatcccctacctgggcgagctgcagttggcgcacggtgggcctacc
ggcggccgcggcggcaacagcgcctacaggctggcaggggtttgggaccggttggtggtg
ggtcctgaacttggcgcagccctgcagtcggtccagggccagagcgtgatgctgatcgat
gaccttgccgacagccggtggacccttaccgtcgcggggcgcgccctccggcaggccggg
gcgggtgcggtgcttcccctggttctggcgcaggcaggctga
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