Pseudomonas denitrificans (nom. rej.): F1C79_13675
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Entry
F1C79_13675 CDS
T09478
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
pden
Pseudomonas denitrificans (nom. rej.)
Pathway
pden00071
Fatty acid degradation
pden00280
Valine, leucine and isoleucine degradation
pden00310
Lysine degradation
pden00362
Benzoate degradation
pden00380
Tryptophan metabolism
pden00410
beta-Alanine metabolism
pden00640
Propanoate metabolism
pden00650
Butanoate metabolism
pden00907
Pinene, camphor and geraniol degradation
pden00930
Caprolactam degradation
pden01100
Metabolic pathways
pden01110
Biosynthesis of secondary metabolites
pden01120
Microbial metabolism in diverse environments
pden01200
Carbon metabolism
pden01212
Fatty acid metabolism
Module
pden_M00087
beta-Oxidation
pden_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
pden00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
F1C79_13675 (fadB)
00650 Butanoate metabolism
F1C79_13675 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
F1C79_13675 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
F1C79_13675 (fadB)
00310 Lysine degradation
F1C79_13675 (fadB)
00380 Tryptophan metabolism
F1C79_13675 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
F1C79_13675 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
F1C79_13675 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
F1C79_13675 (fadB)
00930 Caprolactam degradation
F1C79_13675 (fadB)
Enzymes [BR:
pden01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
F1C79_13675 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
F1C79_13675 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
F1C79_13675 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
F1C79_13675 (fadB)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
QEY72567
UniProt:
A0A9X7MZS4
LinkDB
All DBs
Position
complement(3025797..3027944)
Genome browser
AA seq
715 aa
AA seq
DB search
MIYQGKAITVKALESGIVELNFDLKGESVNKFNRLTLNELRQAVDTIKADASVKGVIVTS
GKGVFIVGADITEFVDNFKLPDEELLAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLE
MCLAADFRVMSATAKVGLPEVKLGIYPGFGGTVRLPRIIGCDNAVEWIASGKENRAEDAL
KVGAVDAVVAPEQLQAAALDLVKRAIAGELDHKARRQPKLEKLKLNAIEQMMAFETAKGF
VAGQAGPNYPAPVEAIKSIQKAANFGRDKALEIEAQGFVKLAKTSVAQSLIGLFLNDQDL
KKKAKQYDEIAKDVKLAAVLGAGIMGGGIAYQSASKGTPILMKDIREEGIQMGLNEASKL
LGKRVEKGRMTPAKMAEALNAIRPTMSYGDFGNVDIVVEAVVENPKVKQIVLAEVEGVVK
EDAVLASNTSTISINLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDVAVATTVA
YAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFSKLLGFGVDFVRIDKIMEKFGWPMGPAYL
SDVVGIDTGHHGRDVMAEGFPDRMAVEGKTAVDVMYDANRLGQKNGKGFYAYETDKRGKP
KKVTDPQAYELLKSIVTEQRELTDEDIINFMMIPLCLETVRCLEDGIVETAAEADMGLIY
GIGFPPFRGGALRYIDSIGVAEFVALADKYADLGALYHPTAKLREMAKNGQKFFG
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgatttaccaaggtaaagccatcacggttaaggctcttgagagcggcatcgtcgaactg
aatttcgacctcaagggcgagtccgtcaacaagttcaaccgactcaccctgaatgaactg
cgtcaagcagtcgataccatcaaggccgatgcgtccgtcaagggcgtgatcgtgaccagc
ggcaagggcgtgttcatcgtcggcgccgacatcaccgagttcgtcgacaacttcaagctg
cctgacgaagagctgctggccggcaacctcgaagccaacaagatcttcagcgacttcgaa
gacctgaacgttccgaccgtagccgcgatcaacggcatcgccctgggcggcggtctggaa
atgtgcctggctgccgacttccgtgtcatgagcgccaccgccaaggtcggcctgccggaa
gtgaagctgggcatctacccgggcttcggcggcaccgttcgcctgccgcgcatcatcggt
tgcgacaacgccgtcgagtggatcgcctcgggcaaggaaaaccgtgctgaagacgcgctg
aaagtcggcgccgtcgacgccgttgtggctccggagcagctgcaagccgccgccctggac
ctggtcaagcgcgccatcgctggcgagctggaccacaaggcccgccgtcagccgaagctg
gaaaagctcaagctgaacgccatcgagcagatgatggccttcgaaaccgccaagggcttc
gtcgcaggccaggccggcccgaactacccggctccggtcgaagcgatcaagtcgatccag
aaagccgccaacttcggtcgtgacaaggcgctggaaatcgaagcccagggcttcgtgaag
ctggccaagacctcggttgcgcagagcctgatcggcctgttcctcaacgaccaggacctg
aagaagaaggccaagcagtacgacgagatcgccaaagacgtgaaactggccgccgtactg
ggcgccggcatcatgggtggcggcatcgcctaccagtccgcttccaagggcactccgatc
ctgatgaaggatatccgcgaagagggtatccagatgggtctgaacgaggcctcgaagctg
ctgggcaagcgcgtcgaaaaaggccgcatgaccccggccaagatggccgaggccctgaac
gccattcgcccgaccatgtcctacggcgacttcggcaacgtcgacatcgtcgtcgaagcc
gtggtcgagaatccgaaggtcaagcagatcgttctggccgaagttgaaggcgtagtgaag
gaagatgcggttctcgcgtcgaacacctccaccatctccatcaacctgctggccaaggcg
ctcaagcgtccggaaaacttcgtcggcatgcacttcttcaacccggtgcacatgatgccc
ctggtcgaagtcatccgcggcgagaagtccagcgacgtcgccgtggccaccaccgtggcc
tacgccaagaagatgggcaagaaccccatcgtggtgaatgactgccctggcttcctggtc
aaccgcgtgctgttcccgtacttcggcggcttctccaagctgctgggcttcggcgtggac
ttcgtgcgcatcgacaagatcatggagaagttcggctggcccatgggcccggcctacctg
tccgacgtggtcggcatcgacaccggccaccacggccgtgacgtgatggctgaaggcttc
ccggaccgcatggccgtggaaggcaagactgccgttgacgtgatgtatgacgccaaccgc
ctgggccagaagaacggcaagggcttctacgcctatgagaccgacaagcgcggcaagccg
aagaaagtcaccgatccgcaggcttatgagctgctgaagtccatcgtcaccgagcagcgc
gagctgaccgacgaggacatcatcaacttcatgatgatcccgctgtgcctggaaaccgtg
cgttgcctggaagacggcatcgtcgaaaccgctgccgaggccgacatgggcctgatctat
ggcatcggcttccctcccttccgtggcggtgccctgcgttacatcgactccatcggtgtg
gccgaattcgtcgcactggccgacaagtacgccgacctgggtgcgctgtaccacccgacc
gcgaagctgcgtgaaatggccaagaacggccagaagttcttcggttga
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