KEGG   Pseudomonas denitrificans (nom. rej.): F1C79_21740
Entry
F1C79_21740       CDS       T09478                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
pden  Pseudomonas denitrificans (nom. rej.)
Pathway
pden03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pden00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    F1C79_21740
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pden03019]
    F1C79_21740
Enzymes [BR:pden01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     F1C79_21740
Messenger RNA biogenesis [BR:pden03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     F1C79_21740
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_25
Other DBs
NCBI-ProteinID: QEY74013
UniProt: A0A9X7N2T5
LinkDB
Position
4705181..4707289
AA seq 702 aa
MSFTSLGLSEALAGAVEAAGYARPTPVQERAIPAVLQGRDLMVAAQTGTGKTGGFALPVL
ERLFPEGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLKSACIFGGVGMN
PQVQAMSKGVDVLVACPGRLLDLIGQGSVDLSRVEILVLDEADRMLDMGFIHDVKKVLAK
LPAKRQNLLFSATFSKDIIDLTNKLLHNPERIEVTPPNTTVERIEQRVFRIPSVQKRALL
AHLVTMGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDV
RILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRTGEAISLVAPDEDKL
LKAIERLTKQRIPDGDMLGFDPDAVLPEIQQPEPKEAPQRQPRKDKAKRGERKDRNKDKP
QQPHAEEQQSAAPNAEGEAVDGDKPAGKRRRRGGRGKKKGDGQGGDAQPNANAQAREPRE
PREPRQPRQPRQQQEQQGQGRQQQAKPARAPKAVDGNRDPEEFLDDDFDNFGNRADYVSP
FPDKDQQRGQRRRGGQGQGQGAGQGQNQGQGQQRARGQGGQGGGQGGSGQGRSQGQGQGQ
GRAAKKPGAGGRGQGQGGNGQGKQGQGQGQRKRGGKAPASRMNDAPLREPSEYGAAKPTR
QPVVINKRDLVRTDRFPTPEQLEELEPRRKTERPALLTRNRE
NT seq 2109 nt   +upstreamnt  +downstreamnt
atgtcctttacttccctcggtctctccgaggccctggctggcgccgttgaagccgccggc
tacgcgcgccccactcccgtccaggaacgcgccatccccgcagtactgcaaggccgcgac
ctcatggttgccgcccagaccggcaccggcaagaccggcggcttcgccctcccggtgctc
gaacgcctgttccccgaaggccacccggaccgcgaacaccgccacggcccgcgccaggcc
cgcgtcctggtactgaccccgacccgcgagctggctgcccaggtgcacgacagcttcaag
gtctacgcccgtgacctgcccctgaaaagcgcctgcatcttcggcggcgtcggcatgaat
ccgcaggtccaggcgatgtccaagggcgtcgacgtcctggtcgcctgccccggccgcctg
ctcgacctgatcggccagggcagcgtcgatctgtcccgcgtggaaatcctcgtcctcgac
gaagccgaccgcatgctcgacatgggcttcatccacgacgtgaagaaggtcctcgccaag
cttccggccaagcgccagaacctgctgttctccgcgaccttctccaaagacatcatcgac
ctcaccaacaagctcctgcacaacccggagcgcatcgaggtcaccccgccgaacaccacc
gtcgagcgtatcgagcagcgtgtgttccgcattccgtcggtacagaagcgcgcgctgctg
gcgcacctggtgaccatgggcgcctgggagcaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctgaccaagcacggcctgccggccgccgcgatccac
ggcaacaagagccagaacgcgcgcaccaaggccctggccgacttcaaggccaacgacgtg
cgcatcctggtcgccaccgacatcgccgcccgcggcctggacatcgaccagttgccccac
gtggtcaactacgagctgcccaacgtcgaggaagactacgtccaccgcatcggccgtacc
ggccgcgccggtcgtaccggtgaagccatctcgctggtggcgccggacgaggacaagctg
ctcaaggccatcgagcgcctgaccaagcagcgcatccccgatggcgacatgctcggcttc
gaccccgacgccgtgctgccggaaatccagcagcccgagccgaaggaagccccgcagcgc
cagccgcgcaaggacaaggccaagcgcggcgagcgcaaggaccgcaacaaggacaagccg
caacaaccgcacgccgaagagcagcagagcgccgctcccaacgctgaaggcgaggccgtc
gacggcgacaagccggccggcaagcgccgccgtcgtggcggacgcggcaagaagaagggc
gacggccagggcggcgatgctcagccgaacgccaacgctcaggctcgtgagccgcgcgaa
ccgcgcgaaccccgtcaaccgcgccagccccgccagcagcaagagcagcagggccagggc
cgtcagcagcaggccaagccggctcgcgcgccgaaagctgtcgatggcaatcgcgatccg
gaagaattcctcgacgacgacttcgacaacttcggcaaccgcgccgactacgtcagcccg
ttcccggacaaggaccagcaacgcggccagcgccgccgtggcggtcagggccagggacaa
ggcgcaggtcagggccagaaccagggtcagggccagcaacgcgcccgcggccagggtggt
cagggcggcggccagggcggcagcggtcaaggccgcagccaaggtcaggggcaaggccag
ggccgtgctgccaagaagcctggcgccggcggtcgtggacaaggccagggcggcaacggc
cagggcaagcaggggcaggggcaaggccagcgcaagcgcggtggcaaggctccggcttcg
cgcatgaacgacgccccgctgcgcgagccgagcgagtacggcgccgccaagccgacccgc
cagccggtagtgatcaacaagcgcgacctggtccgtaccgaccgcttcccgacgccggag
cagctggaagaactggaaccgcgccgcaagaccgagcgtcccgcgctgctgacccgcaac
cgcgagtga

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