Pseudomonas denitrificans (nom. rej.): F1C79_21740
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Entry
F1C79_21740 CDS
T09478
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pden
Pseudomonas denitrificans (nom. rej.)
Pathway
pden03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pden00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1C79_21740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pden03019
]
F1C79_21740
Enzymes [BR:
pden01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F1C79_21740
Messenger RNA biogenesis [BR:
pden03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F1C79_21740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QEY74013
UniProt:
A0A9X7N2T5
LinkDB
All DBs
Position
4705181..4707289
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AA seq
702 aa
AA seq
DB search
MSFTSLGLSEALAGAVEAAGYARPTPVQERAIPAVLQGRDLMVAAQTGTGKTGGFALPVL
ERLFPEGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLKSACIFGGVGMN
PQVQAMSKGVDVLVACPGRLLDLIGQGSVDLSRVEILVLDEADRMLDMGFIHDVKKVLAK
LPAKRQNLLFSATFSKDIIDLTNKLLHNPERIEVTPPNTTVERIEQRVFRIPSVQKRALL
AHLVTMGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDV
RILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRTGEAISLVAPDEDKL
LKAIERLTKQRIPDGDMLGFDPDAVLPEIQQPEPKEAPQRQPRKDKAKRGERKDRNKDKP
QQPHAEEQQSAAPNAEGEAVDGDKPAGKRRRRGGRGKKKGDGQGGDAQPNANAQAREPRE
PREPRQPRQPRQQQEQQGQGRQQQAKPARAPKAVDGNRDPEEFLDDDFDNFGNRADYVSP
FPDKDQQRGQRRRGGQGQGQGAGQGQNQGQGQQRARGQGGQGGGQGGSGQGRSQGQGQGQ
GRAAKKPGAGGRGQGQGGNGQGKQGQGQGQRKRGGKAPASRMNDAPLREPSEYGAAKPTR
QPVVINKRDLVRTDRFPTPEQLEELEPRRKTERPALLTRNRE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttacttccctcggtctctccgaggccctggctggcgccgttgaagccgccggc
tacgcgcgccccactcccgtccaggaacgcgccatccccgcagtactgcaaggccgcgac
ctcatggttgccgcccagaccggcaccggcaagaccggcggcttcgccctcccggtgctc
gaacgcctgttccccgaaggccacccggaccgcgaacaccgccacggcccgcgccaggcc
cgcgtcctggtactgaccccgacccgcgagctggctgcccaggtgcacgacagcttcaag
gtctacgcccgtgacctgcccctgaaaagcgcctgcatcttcggcggcgtcggcatgaat
ccgcaggtccaggcgatgtccaagggcgtcgacgtcctggtcgcctgccccggccgcctg
ctcgacctgatcggccagggcagcgtcgatctgtcccgcgtggaaatcctcgtcctcgac
gaagccgaccgcatgctcgacatgggcttcatccacgacgtgaagaaggtcctcgccaag
cttccggccaagcgccagaacctgctgttctccgcgaccttctccaaagacatcatcgac
ctcaccaacaagctcctgcacaacccggagcgcatcgaggtcaccccgccgaacaccacc
gtcgagcgtatcgagcagcgtgtgttccgcattccgtcggtacagaagcgcgcgctgctg
gcgcacctggtgaccatgggcgcctgggagcaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctgaccaagcacggcctgccggccgccgcgatccac
ggcaacaagagccagaacgcgcgcaccaaggccctggccgacttcaaggccaacgacgtg
cgcatcctggtcgccaccgacatcgccgcccgcggcctggacatcgaccagttgccccac
gtggtcaactacgagctgcccaacgtcgaggaagactacgtccaccgcatcggccgtacc
ggccgcgccggtcgtaccggtgaagccatctcgctggtggcgccggacgaggacaagctg
ctcaaggccatcgagcgcctgaccaagcagcgcatccccgatggcgacatgctcggcttc
gaccccgacgccgtgctgccggaaatccagcagcccgagccgaaggaagccccgcagcgc
cagccgcgcaaggacaaggccaagcgcggcgagcgcaaggaccgcaacaaggacaagccg
caacaaccgcacgccgaagagcagcagagcgccgctcccaacgctgaaggcgaggccgtc
gacggcgacaagccggccggcaagcgccgccgtcgtggcggacgcggcaagaagaagggc
gacggccagggcggcgatgctcagccgaacgccaacgctcaggctcgtgagccgcgcgaa
ccgcgcgaaccccgtcaaccgcgccagccccgccagcagcaagagcagcagggccagggc
cgtcagcagcaggccaagccggctcgcgcgccgaaagctgtcgatggcaatcgcgatccg
gaagaattcctcgacgacgacttcgacaacttcggcaaccgcgccgactacgtcagcccg
ttcccggacaaggaccagcaacgcggccagcgccgccgtggcggtcagggccagggacaa
ggcgcaggtcagggccagaaccagggtcagggccagcaacgcgcccgcggccagggtggt
cagggcggcggccagggcggcagcggtcaaggccgcagccaaggtcaggggcaaggccag
ggccgtgctgccaagaagcctggcgccggcggtcgtggacaaggccagggcggcaacggc
cagggcaagcaggggcaggggcaaggccagcgcaagcgcggtggcaaggctccggcttcg
cgcatgaacgacgccccgctgcgcgagccgagcgagtacggcgccgccaagccgacccgc
cagccggtagtgatcaacaagcgcgacctggtccgtaccgaccgcttcccgacgccggag
cagctggaagaactggaaccgcgccgcaagaccgagcgtcccgcgctgctgacccgcaac
cgcgagtga
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