Pseudomonas denitrificans (nom. rej.): F1C79_27105
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Entry
F1C79_27105 CDS
T09478
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pden
Pseudomonas denitrificans (nom. rej.)
Pathway
pden02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pden00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
F1C79_27105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pden03021
]
F1C79_27105
Transcription machinery [BR:
pden03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
F1C79_27105
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Sigma70_ECF
Rv2175c_wHTH
MerR
HTH_17
HTH_24
HTH_29
Sigma70_r3
HTH_11
Motif
Other DBs
NCBI-ProteinID:
QEY74996
UniProt:
A0A9X7N5B7
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Position
complement(5848894..5849412)
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AA seq
172 aa
AA seq
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MSAIQMGSGELVGALYRDHRDWLTAWLNRSLGCPQRAEDLSQDTFVRVLGRRELPSLREP
RAFLVTVAKGLLVDHWRRVALEQAYLDELKCLPEAVQPSAEDHCLILADLREIDRLLGKL
STRARSAFLLNRLDGLGHAEIAEQLGVSVPRVRQYIAQGLRQCYIALYGEPT
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
ttgtcggccatccagatgggtagcggcgaactcgttggcgccttgtatcgcgatcaccgc
gactggttgactgcctggctgaatcgcagcctgggctgtccgcagcgcgccgaagacctg
agccaggacaccttcgttcgcgtgctcggccgtcgcgagctgccctccctgcgcgaaccg
cgcgccttcctggtgaccgtcgccaagggcctgctggtggaccactggcgccgcgtggcg
ctggagcaggcctacctcgacgagctgaaatgcctgcccgaagcggtgcagccttccgcc
gaggaccactgcctgatcctcgccgacctgcgcgagatcgaccgtctgctgggcaagctg
tccacccgcgcacgcagtgccttcctgctcaaccgcctggacggcctgggccacgccgaa
atcgccgagcaactgggcgtttccgtaccgcgcgtgcgccagtacatcgcccagggcctg
cgccagtgctacatcgcgctgtacggcgagccgacgtga
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integrated database retrieval system