KEGG   Pseudomonas denitrificans (nom. rej.): F1C79_27105
Entry
F1C79_27105       CDS       T09478                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pden  Pseudomonas denitrificans (nom. rej.)
Pathway
pden02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pden00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    F1C79_27105
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pden03021]
    F1C79_27105
Transcription machinery [BR:pden03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     F1C79_27105
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 HTH_23 Sigma70_ECF Rv2175c_wHTH MerR HTH_17 HTH_24 HTH_29 Sigma70_r3 HTH_11
Other DBs
NCBI-ProteinID: QEY74996
UniProt: A0A9X7N5B7
LinkDB
Position
complement(5848894..5849412)
AA seq 172 aa
MSAIQMGSGELVGALYRDHRDWLTAWLNRSLGCPQRAEDLSQDTFVRVLGRRELPSLREP
RAFLVTVAKGLLVDHWRRVALEQAYLDELKCLPEAVQPSAEDHCLILADLREIDRLLGKL
STRARSAFLLNRLDGLGHAEIAEQLGVSVPRVRQYIAQGLRQCYIALYGEPT
NT seq 519 nt   +upstreamnt  +downstreamnt
ttgtcggccatccagatgggtagcggcgaactcgttggcgccttgtatcgcgatcaccgc
gactggttgactgcctggctgaatcgcagcctgggctgtccgcagcgcgccgaagacctg
agccaggacaccttcgttcgcgtgctcggccgtcgcgagctgccctccctgcgcgaaccg
cgcgccttcctggtgaccgtcgccaagggcctgctggtggaccactggcgccgcgtggcg
ctggagcaggcctacctcgacgagctgaaatgcctgcccgaagcggtgcagccttccgcc
gaggaccactgcctgatcctcgccgacctgcgcgagatcgaccgtctgctgggcaagctg
tccacccgcgcacgcagtgccttcctgctcaaccgcctggacggcctgggccacgccgaa
atcgccgagcaactgggcgtttccgtaccgcgcgtgcgccagtacatcgcccagggcctg
cgccagtgctacatcgcgctgtacggcgagccgacgtga

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