Planococcus donghaensis: BCM40_09875
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Entry
BCM40_09875 CDS
T04451
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pdg
Planococcus donghaensis
Pathway
pdg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pdg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BCM40_09875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdg03400
]
BCM40_09875
Enzymes [BR:
pdg01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BCM40_09875
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BCM40_09875
DNA repair and recombination proteins [BR:
pdg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BCM40_09875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn-ribbon_8
Motif
Other DBs
NCBI-ProteinID:
ANU23667
UniProt:
A0A1C7EJY7
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All DBs
Position
1268174..1269043
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AA seq
289 aa
AA seq
DB search
MPELPEVEGVVRQIRPVSIGKKIEAVAVSDVIRLSKENGKEAIIKRIEADGFINSLTGAQ
IVRVERRSKYIYFTLRKDNEFLLVNHLGMSGAWFYVDQLQSIPEDKFRRHVHIVLTLSDG
NLLAFSDIRRFGEMRVLQEEGDFPPLLLMAPEPFHESALAHFLAMAESPKYKNKAIKEII
MDGQIISGCGNIYATEALFKMKIHPKRAASRISRKRKVELFESIVAILQESIRAGGSTIS
DYRDINGESGNMQNRFGMYGKKQCADCGTATKTLKIGGRASVYCPTCQK
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacttccagaagtcgaaggagtcgttcggcaaatccgccccgtttcgattgga
aagaaaattgaagctgtagcggtgtcggacgtgatccgcttatcaaaagaaaatggcaaa
gaagctattattaaacgaatagaagctgacggctttatcaacagcttaaccggtgcacaa
atcgtccgtgtagaacgacgtagcaaatacatttatttcacattgcgtaaagacaatgaa
tttttgttagttaatcatttaggaatgtctggagcttggttttatgtcgaccagcttcag
tcgattcctgaagataaatttcgacgccatgtccacattgtgttgactttaagtgatgga
aatttgttagcgttttcagacattcgtcgattcggagaaatgcgagtcttgcaagaagaa
ggtgatttccctcctttattattaatggctcctgaaccttttcatgaaagtgcacttgcg
cattttttagctatggcagaaagtccgaaatataaaaataaagccatcaaagaaatcatt
atggatggtcaaattatttctggttgcggcaatatatacgcgacagaagctttgtttaaa
atgaagattcatccgaaacgtgctgcgagtcgcattagccgaaagcgaaaagtagaacta
tttgaatcgatagttgccattttgcaagaaagcattagagcaggaggtagtacaatttca
gattaccgtgatattaacggggaatcaggcaacatgcaaaatcgttttggtatgtatgga
aaaaaacaatgtgcagattgtggcacagcgacaaaaaccttgaaaattggcggtagggct
tctgtgtattgcccgacgtgtcagaaatga
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