Paracoccus sediminicola: PAF18_16020
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Entry
PAF18_16020 CDS
T09284
Name
(GenBank) Ku protein
KO
K10979
DNA end-binding protein Ku
Organism
pdim
Paracoccus sediminicola
Pathway
pdim03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pdim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PAF18_16020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdim03400
]
PAF18_16020
DNA repair and recombination proteins [BR:
pdim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PAF18_16020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Imm61
Motif
Other DBs
NCBI-ProteinID:
WBU58465
LinkDB
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Position
p1:complement(77487..78311)
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AA seq
274 aa
AA seq
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MAPRALWKGQLRLSLVSIPVEIFSATKSGARVSFRQIHKPSGKRIRYEKSLPGIGPVKTE
DIVKGYEVDDDEYILLDPDEIDAIKLETKKTFELVQFVDACEISPLYFDKPYYITASDDL
AQDAYRVVRDALRAAGKVGLGQVTMRGKEYLAAVKPCGDGLLMETLHYEDELREADQIFT
DIEDEKVDKELLEVATSLIDRKSAPFDASAYHDKYAEAMQDLLDAKMRNKKTPRVRTDDD
SGGGDNVVDLMSALKQSLKDADGKKKKKPAKKAS
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgcgcgcactctggaagggacagcttcgcctgtcgctggtttccatcccggtc
gagatattctcggccaccaaatccggtgcgcgggtgtcgttccgccagatccacaagcct
tctggcaagcgcatccgctacgagaaatccttgcccggcatcggcccggtcaagaccgag
gacatcgtaaaaggctacgaggtcgatgacgacgaatacatcctgctcgacccggacgag
atcgacgcgatcaagctggagacgaaaaagaccttcgaactggtgcaattcgtcgatgcc
tgcgaaatctcgccgctttatttcgacaagccctattacatcaccgcctcggacgatctg
gcgcaggatgcctaccgcgtggtgcgcgatgcgttgcgggccgcgggcaaggtgggtctg
gggcaggtgacgatgcgcggcaaggaatatctggccgccgtcaaaccctgcggcgacggg
ctgctgatggagacgctgcattacgaggacgagctgcgcgaggccgatcagatcttcacc
gatatcgaggacgagaaggtcgacaaggagttgctggaggtcgccacctccctgatcgac
cgcaagagcgcgccctttgatgcgagcgcctatcacgacaagtatgccgaggcgatgcag
gacctgctggacgcgaagatgaggaacaagaagaccccgcgcgtgcgcacggacgatgac
agcgggggcggcgacaatgtggtcgatctgatgagcgcgctgaaacagagcctgaaggac
gccgacggcaagaagaaaaagaaaccggccaagaaggcgtcctag
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