Paraburkholderia dioscoreae: PDMSB3_0132.2
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Entry
PDMSB3_0132.2 CDS
T08115
Name
(GenBank) Type IV secretory pathway VirD4 protein-like protein
Organism
pdio
Paraburkholderia dioscoreae
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TrwB_AAD_bind
TraG-D_C
T4SS-DNA_transf
AAA_10
DUF87
DUF3708
Motif
Other DBs
NCBI-ProteinID:
VVD30968
UniProt:
A0A5Q4ZKX0
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Position
pI:complement(93892..95946)
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AA seq
684 aa
AA seq
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MKDKVISDAGAGRALFLTRMKLTLHAVSMALWAGALPGLLVPLVLWLSCLSPKDVDLVKE
NIVSHMVSDTTPRKWKIRDEAGVRKVLTVVRADGSEVQLLTPAQFRSVTQSLSRPITVFG
YVVLASLVTAVLGYMSIWWSLSRVGKNARENKRIDGAKDLVEPKELSALVRKEEPGSYRV
LDVALPRSALMQGVLFQGAQGTGKSLGMHDLMLQAFARKRKCVIYDPSGEYFRAYYRPGK
DHFFNPALLGSVPWSIFAELVYAYDANTLAQAFLPPKAGVVHGASAFFEDAARALFSVIL
LRLAQRGAQHTRLIADAFLDMPDDEMDLLIKKSVASSAVGGDSKGQRQGVISSIAIYLDG
IAAVQEGTWSIRDFIDADDDARFFILSTDDTEAMFTPLYRLLLTVSFAVIAAKQEIVHED
KYFYFLDEVAKLGDIKLDEVQAELRKYGVCVAAGIQSDKQLVTSMGQDRGETVLNCFNTV
VMLRANEPNTAKRMADRLGKRDMAVVGNGQALAVTDWRDGGTLNQNEQEKWLVHPAKIGQ
MKNCTAYIRLPGDYPATFVDYRNWLPRWYRPWPRVARFKAIQPTPPRDEKFRVVRAEGQD
ALASVRAEAELQRAEAARLAEEEKRADAARAAEAKEAIERDGIWVVKDMETGELEETYGF
EGGNSSGRGKRTEKASADEGGLFQ
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagataaagtcatttccgacgcgggagcgggccgggcgctattccttacccggatg
aagctgacgttgcatgcggtttccatggcgttgtgggctggtgcactgccgggcttgctt
gttcctctggttctctggcttagctgcctttcaccgaaggacgtagacctggtcaaggag
aatatcgtctctcacatggtcagcgatacgacgccacggaaatggaaaatccgggacgag
gcgggcgtgaggaaggtgttgacggttgtgcgagcggacggcagtgaagttcagttgcta
accccagcacaatttcggagtgtcacgcagtcgctttcacgtccgattacggttttcggc
tacgttgtgctggctagtctggtgacggcagttctgggttatatgtcgatctggtggtcc
ctgagtcgggtcgggaagaacgctcgcgagaataagcgcatcgacggcgcgaaggatctg
gttgagccaaaagagctttcggcactggtgcgcaaggaggagccgggttcttaccgggtt
ctggatgtcgcgttaccgcgcagcgccctgatgcagggggttctgtttcagggtgcgcag
ggcaccgggaagtcgctcgggatgcatgacctgatgttgcaggcattcgcgcgcaagcgg
aagtgcgtgatctatgacccaagcggcgagtacttccgcgcgtactatcgcccaggaaag
gaccattttttcaatccggcgttgctcgggtcggtgccgtggtcgatctttgctgagctt
gtctacgcctacgatgcaaatacgctggcgcaggcatttctgccgccgaaggccggcgtc
gtgcacggggcaagcgcattcttcgaggacgcggcgcgtgcgctgttctctgtgattctt
ctgcgtctcgcgcaacgcggcgcgcagcatacccgcctcattgcggacgcgtttctggat
atgcccgacgacgaaatggacttgctgatcaagaaatcggttgcaagctctgcggtcggc
ggggactcgaaggggcagcgtcaaggcgttatcagttcgattgcgatttaccttgatggc
attgctgccgtccaggagggtacgtggtctattcgggattttatcgacgctgatgacgat
gcgcgtttctttattctcagcacggacgacaccgaggcgatgttcacgccgctgtatcgc
ttattgctgaccgtctccttcgcagtgatcgccgccaagcaggagatcgtgcacgaggac
aagtatttctatttcctcgacgaggtcgccaagctgggcgatatcaagcttgacgaagta
caggcagagctgcggaagtatggtgtttgcgtcgcagcggggatacagagtgataaacag
ctcgttacgtccatgggtcaggatcgcggggaaaccgtcctcaactgctttaacacggtc
gtcatgctgcgtgccaacgagccgaacacggccaaacgcatggctgaccggcttgggaaa
cgggatatggcggtcgttggaaacggtcaggcgcttgccgtaactgattggcgggacggc
ggtacgctgaatcagaacgaacaggaaaaatggctggtgcacccggcgaaaatcgggcaa
atgaagaactgcacggcctatatccgcctgcccggggactatcccgcaacattcgtggat
taccggaactggttgccgcggtggtatcgaccctggccgcgcgtcgctcgtttcaaggca
atccagccgacgcccccgcgtgacgagaaattccgggtggtccgcgccgagggtcaggat
gcgcttgcgagcgtgcgggccgaagccgagctgcagcgcgcggaggccgcacggctcgca
gaggaggaaaagcgggccgacgctgcccgcgcagctgaggcgaaagaagccatcgaacgg
gacggcatctgggtcgtgaaggacatggagaccggcgagcttgaagagacctacggcttt
gagggcgggaattcgtccggccggggaaaacggacagaaaaggcgtcagcggatgagggg
gggctttttcaatga
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