Paraburkholderia dioscoreae: PDMSB3_1947
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Entry
PDMSB3_1947 CDS
T08115
Symbol
rpoS
Name
(GenBank) RNA polymerase sigma factor RpoS
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
pdio
Paraburkholderia dioscoreae
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdio03021
]
PDMSB3_1947 (rpoS)
Transcription machinery [BR:
pdio03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PDMSB3_1947 (rpoS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r1_2
HTH_20
HTH_Crp_2
KORA
Motif
Other DBs
NCBI-ProteinID:
VVD28403
UniProt:
A0A5Q4ZBN2
LinkDB
All DBs
Position
I:1995961..1997043
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AA seq
360 aa
AA seq
DB search
MPKSKRPPQQAESETISHAMSASVDESGASEVEEEVAEERDLDERQGGADEGGDAREGAS
EVAPDADDFRALLQAELTADTIQHYLNRISVKPLLTVEEEQKYSRLAKAGEFEARQVMIE
RNLRLVVSIAKGYLNRGVPLLDLIEEGNLGLMHAIEKFDPTRGFRFSTYATWWIRQSIER
AIMNQARTVRLPVHVIRELNQVLRAKRHLEKNSMNSGEAAERRDASIDDIAYLTGKTTDE
VTDILALNEHTASLDAPLDLDPASSLLDLLSDDQSQSPDAEVQHRELETLTRAWLARLSD
KHRHVIERRFGLNHIEPATLEELADEMGLTRERVRQIQQEALVRLKRFFASNGVRKDAVL
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaatcgaagcgcccgccacagcaagccgagtctgagacgatcagccacgctatg
tccgcttcggtggatgaaagcggcgcttcggaagtggaagaggaggtcgcggaggagcgc
gatctcgacgaacgccagggcggcgcggacgaaggcggcgacgcccgcgaaggcgcgagc
gaagtcgcgccggacgcggacgacttccgcgcgctgttgcaagccgaactgacggccgac
acgattcagcactatctgaaccgtatcagcgtcaagccgctcctgaccgtcgaggaagag
caaaagtattcgcgtctcgccaaggcgggcgagttcgaagcgcggcaggtcatgatcgag
cgcaatttaaggctcgttgtcagcattgcgaagggctacctgaaccgtggcgtgccgctg
ctcgatctgatcgaagaaggcaatctcggcctgatgcacgcgatcgaaaaattcgatccg
acgcgcggcttccggttttccacctacgcgacctggtggatccgccagagtatcgagcgc
gcgatcatgaaccaggcgcgcaccgtccgtttgccggtgcacgtgattcgcgagctcaat
caggtgctgcgcgccaagcgccatctggaaaagaattcgatgaactccggcgaagccgcc
gagcgccgcgacgccagcatcgacgacattgcctatctgaccggcaagaccaccgacgaa
gtgacggacatcctcgcgctgaacgagcacaccgcgtcgctggacgcgccgctcgatctc
gatccggcgagcagcctgctcgatctgctgtcggacgaccagagccagtcgccggacgcc
gaagtgcagcaccgcgaactggaaacgctgacacgcgcgtggctggcgcgtttgtcggac
aagcatcgtcacgtgatcgagcgccgcttcggcctgaatcacatcgagcccgccacgctc
gaagagctggccgacgaaatgggcctcacgcgcgagcgtgtacgccagatccaacaggaa
gcgctcgtgcgactaaagcgcttcttcgcctccaacggtgttcggaaagacgccgttcta
taa
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