Paraburkholderia dioscoreae: PDMSB3_1965
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Entry
PDMSB3_1965 CDS
T08115
Symbol
ku
Name
(GenBank) Non-homologous end joining protein Ku
KO
K10979
DNA end-binding protein Ku
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PDMSB3_1965 (ku)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdio03400
]
PDMSB3_1965 (ku)
DNA repair and recombination proteins [BR:
pdio03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PDMSB3_1965 (ku)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
DUF1045
DUF3284
Glyco_tranf_2_3
TFIIF_alpha
Motif
Other DBs
NCBI-ProteinID:
VVD28421
UniProt:
A0A5Q4Z6I3
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All DBs
Position
I:2018025..2019038
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AA seq
337 aa
AA seq
DB search
MAHMIWKGAISFGLVHVPVQLYPATQSEKVGFNLLDKRTIDPVGYKQINKRTGKDVTRDN
IVRGFEYEKDKYVVLSDDEIRAANPESTQTVDILAFVDALDISFLYLDTPYFLTPDRKGE
KVYALLREAMKASGKIGVASVVLHNKQHLAALIPVGPVLALNTLRWAAEVRDFDEFKLPP
EGMKAAGVSARELDMAKKLIDDMSDKWDPSQYHDTFRDDIMALVDRKIRAGKTEEITEVE
APHESRQSADILDLSDLLKRSLGRGKGKPAAGSRKRTADDEDDADTDTAVPARKKPRATR
AASTAASATTHGRSSAGGRASAKAASTPAARKRRAAA
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atggcacacatgatctggaagggcgcaatcagcttcggcctcgttcacgtgccggtgcag
ttatatccggcgacgcaatcggagaaggtcggcttcaatctgctggacaagcgcacaatc
gatccggtcggctacaagcagatcaacaagcgtaccggcaaggacgtgacgcgcgataac
atcgtgcgcggcttcgagtacgaaaaggacaagtacgtcgtgctctcggacgacgagatc
cgcgcggcgaatcccgagtcgacgcaaacggtcgatatcctcgcgttcgtcgacgcgctg
gacatttcgttcctctatctcgacacgccgtatttcctcacgcccgaccgcaagggcgaa
aaggtctacgcgctgctgcgcgaagccatgaaggcgtcgggcaagatcggcgtggcgagt
gtcgtgctgcacaacaagcagcatctcgcggcgttgattccggtcggtccggtgctggcg
ttgaacacgctgcgctgggccgcggaagtgcgcgacttcgacgaattcaagctgccgccc
gagggcatgaaagccgcgggcgtgtccgcgcgcgaactcgacatggcgaagaagctgatc
gacgacatgagcgacaagtgggatccgtcgcagtatcacgacactttccgcgacgacatc
atggcgctggtcgaccgcaagattcgcgcgggcaagaccgaggagatcactgaagtcgaa
gcgccgcatgagtcgcgtcaatccgccgacattcttgatctgtccgatctgctcaaacgc
agcctcggacgcggcaagggcaagccggcggcgggcagccgcaagcgcaccgctgacgac
gaagacgacgccgacaccgacaccgcggtgccggcccgcaagaagccacgcgcgacgcgc
gccgcgagcaccgccgcgagtgcgacgacgcatggccgcagcagcgcgggcggccgcgca
agtgcgaaggctgcctcaacgccggcggcccgcaagcgccgcgcggctgcctga
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