KEGG   Paraburkholderia dioscoreae: PDMSB3_2609.1
Entry
PDMSB3_2609.1     CDS       T08115                                 
Name
(GenBank) Helicase domain protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
pdio  Paraburkholderia dioscoreae
Brite
KEGG Orthology (KO) [BR:pdio00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pdio03400]
    PDMSB3_2609.1
Enzymes [BR:pdio01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     PDMSB3_2609.1
    5.6.2.6  RNA 3'-5' helicase
     PDMSB3_2609.1
DNA repair and recombination proteins [BR:pdio03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    PDMSB3_2609.1
SSDB
Motif
Pfam: Lhr_WH DEAD_assoc DEAD Helicase_C ResIII AAA_25
Other DBs
NCBI-ProteinID: VVD33893
UniProt: A0A5Q4ZMQ5
LinkDB
Position
II:2695188..2697836
AA seq 882 aa
MTEPAESDESAVPAPSAPPERRRAPRPRRIPRSREQQARLAAREPAFEPLPFAIDETAAR
RPFADRLAAWFEARRWQPFEFQRGVWQEIGRGASGLLHATTGAGKTWAVWFGALAAFVTT
PTPPTRQRATRAQPEPLTVLWITPMRALAADTARALQSSAAELVVPWSVGLRTGDTSSAE
RARQNRRMPSALVTTPESLSLMLTRSDARDVLAHVRLVIVDEWHELLGNKRGTQTQLALA
RLAHWRPELQVWGLSATLGNLPFAADVLLAPVKTPRASVHGALPKALIVDTVIPETIERF
PWGGHVGMRQVGAVAEAIGEAQTSLVFTNTRSQCEVWYQALLEARPEWAGLIALHHGSLD
QEVREWVERGLKSGLLKVVVCTSSLDLGVDFLPVERVFQIGSPKGVARLMQRAGRSGHAP
GRPSRVTIVPTHALELVEAAAAREAVGKRQIEGRETPEKPFDVLVQHLVTVAIGGGFDAR
ELYGEIRSTYAYRQLTQAEFDWALGFVEGGGTALRAYPDYHRVVRESDGLYHVPREDLVR
RHRNNIGTIVANGTLNVAYLSGGRIGAIEESFISRLKPGDIFTFGGRALELIRVQDMTAW
VRRATSSRGAMPQWAGSRMPLSSELADATLTMLARAASGIYDEPEMRAVRPLLELQQKWS
ALPEPGVLVVELVKSREGYHFFCYPFAGRTAHIGLGALLAWRIAREQPGTFSISMNDYGF
ELLSAQPFDWAAKLEGGLLSPEELEHDILASLNSSELSMRRFREIARVSGLVFQGHPGQQ
KSARQLQASSGLFYEIFRNHDSGNLLLNQADDEVLLQELDARRIRTALERMNTSRVVVTR
PKKPTPFAFPLIVGRLREKVSTEKLADRVERMLAELEKAART
NT seq 2649 nt   +upstreamnt  +downstreamnt
atgaccgagccggctgagtccgacgagagtgcggtccccgctccctctgcgccgcccgag
cgtcggcgcgctccccgaccgcgccggattccgcgcagccgcgaacagcaggcgcggctc
gccgcacgcgaaccggccttcgagccgctgcctttcgccatcgacgaaacggccgcgcgc
cgccccttcgccgacagactcgccgcatggttcgaggcgcgccgctggcagccattcgag
tttcaacgcggggtctggcaggaaatcggccgtggcgcgagtggtttgctgcatgccacg
accggcgcaggtaaaacctgggctgtctggttcggcgcactggccgccttcgtgacaacg
ccgacgccgcctacccgccagcgcgcgacccgagcgcagcctgaaccgctcaccgtgctg
tggatcacgccgatgcgtgcgctcgccgcggacaccgcacgcgccttgcaaagttcggcg
gcagaactggtcgtgccgtggagcgttgggttgcgcaccggcgatacgtcgtccgcagaa
cgcgcacggcaaaatcgacgcatgccgtcggcgctcgtcacgacaccggaaagtctttca
ctcatgctgacgcggtccgatgcacgcgacgtgcttgcgcacgtgcgactggtaatcgtc
gacgaatggcatgagttgctcggcaacaagcgcggcacgcaaacgcaacttgcgcttgct
cgccttgcacattggcggcctgaattgcaggtatgggggttgtcggcgacgctcggcaat
ctgcccttcgccgccgatgtattgctcgcgcccgtgaagacgccacgcgcaagcgtgcac
ggcgcgctgcccaaagcgctgatcgtcgataccgtcatacccgaaactatcgagcggttt
ccgtggggcggccatgtaggcatgcgccaggtcggcgccgtcgccgaggcgatcggcgaa
gctcaaacctcgctcgtgtttaccaacacacgctcgcaatgcgaggtgtggtatcaggcg
ctgctcgaagcgcggcccgaatgggccggcctgatcgcgctgcatcatggctcgctcgat
caggaagtgcgcgaatgggtcgagcgcggcctcaagagcggcttgctgaaagtggttgta
tgcacatcgagcctcgatctgggcgtcgattttctgccggtggagcgcgtgtttcagatc
ggctcgcccaaaggcgtcgcgcgtttgatgcagcgcgcgggccgttcgggtcacgcgccg
ggacgcccttcgcgagtgacgatcgtgccgacgcatgcgctcgaactggtcgaagccgcc
gccgcgcgcgaggctgtcgggaagcgtcagatagaaggccgcgaaacaccggagaagccg
ttcgacgtgctggtgcagcatctcgttaccgtggcgatcggcggcgggttcgatgcgcgc
gaactgtacggcgagattcgcagtacctatgcctaccggcagttgacgcaggccgagttc
gattgggcgctcggcttcgtggaaggcggcggcacggcgttacgcgcctaccccgattac
catcgcgtggtacgcgaaagcgacgggctgtaccacgtgccgcgcgaggatctggtgcga
aggcatcgcaacaacatcggcacgatcgtcgctaatggcaccttgaacgtcgcctacctc
tcgggcggccggattggcgccatcgaggaatcgtttatttcgcggctcaagcccggcgat
atctttacgttcggcggacgcgccctcgaattgatccgcgtgcaggatatgaccgcgtgg
gtgcggcgcgccacgtcgtcgcgcggagccatgccgcaatgggccggcagccgtatgccg
ctttcttccgaactcgccgacgccacgctcacgatgctcgcgcgcgccgcttccggcatc
tacgacgaaccggaaatgcgcgccgtgcggccgctgctcgaattgcagcagaagtggtcg
gcattgcccgaaccgggcgtactggtagtggaattggtgaaatcgcgcgaagggtatcat
ttcttttgctatccgtttgcggggcgcacggcgcatatcggtttgggcgcattgctcgca
tggcgcatcgcgcgcgagcagcccggcaccttttccatttcaatgaacgactacggcttc
gaactgttgtccgcgcaaccgttcgattgggcggcgaaactcgaaggcggtttgctctcg
cccgaagaactggaacacgacattctcgcgagcctcaattcgtcagagctctccatgcgg
cgctttcgcgagatcgcgcgcgtgtcgggattggtattccaggggcatcccggacagcag
aaaagcgcgcggcagttgcaagcgtcgagcggcctcttctacgagatctttcgcaatcac
gatagcggcaatctgttgctcaaccaggccgatgacgaagtgttgctgcaggaactcgac
gcccggcgcattcgcaccgcgctcgaacgcatgaacacgagccgcgtggttgtcacacgc
ccgaaaaaaccgacgccgtttgcgtttccgttgatcgtcggacgcttgcgggagaaggtc
agtacggagaaactcgcggatcgcgtcgagcggatgctggccgaactcgagaaggcggcc
cgcacatga

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