Pantoea dispersa: D8B20_09145
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Entry
D8B20_09145 CDS
T06714
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pdis
Pantoea dispersa
Brite
KEGG Orthology (KO) [BR:
pdis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdis03032
]
D8B20_09145 (topA)
03400 DNA repair and recombination proteins [BR:
pdis03400
]
D8B20_09145 (topA)
Enzymes [BR:
pdis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
D8B20_09145 (topA)
DNA replication proteins [BR:
pdis03032
]
Prokaryotic type
DNA Topoisomerases
D8B20_09145 (topA)
DNA repair and recombination proteins [BR:
pdis03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
D8B20_09145 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
DUF2399
Motif
Other DBs
NCBI-ProteinID:
QDY42051
UniProt:
A0A518XCY2
LinkDB
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Position
complement(1972838..1975435)
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AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSTTRKSADGEKSKTGKKVK
KDEKAALVSRMGVDPWHGWEADYQILPGKEKVVAELKNLAADADHIYLATDLDREGEAIA
WHLREVIGGDDKRFSRVVFNEITKNAIRQAFEKPGELNIERVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWEIDADFATPKGDALAMRVTH
QNDKAFRPVNREQTQAAVAILEKARFAVLDREDKPTSSKPSAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGHITYMRTDSTNLSQDAVAMARGYVESSFGKKYLPDAPVTYASKEN
SQEAHEAIRPSDVNVAAEQLKDMEADAQKLYQLIWRQFVACQMVPAQYDSTTLTVAAGDF
RLKAKGRTLRFDGWTKVMPALRKNDEDLTLPPVNVGDTLDLTALRPGQHFTKPPARFSEA
SLVRELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY
DFTAHMEDSLDQVANNEAEWKAVLDSFFSDFSQQLDQAEKDPEEGGMQPNQMVLTSIDCP
TCGRKMGIRTASTGVFLGCSGYALPPKERCKQTINLIPENEVLNVLEGDDAETNALRARR
RCQKCGTAMDSYLIDNSRKLHVCGNNPECDGYEIEQGEFRIKGYDGPIVECEKCGSEMHL
KMGRFGKYMACTNDECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELQRFADRLPEKLKYLAEAPAVDPEGNKTLVRFSRKTKQQYV
ASEKEGKATGWSVFYVDGKWQEVKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagcactcgtcatcgttgagtccccggcaaaggccaaaacaatcaataaatac
ctcggtaatgactacgtggtgaaatccagcgtcggtcatatccgtgatttgccgaccagt
ggttcaacgacccgtaaaagtgccgatggagagaagagcaaaaccggcaagaaagtcaaa
aaagatgagaaggccgcgctggtcagccgcatgggtgtcgacccctggcacggctgggaa
gcggattatcagatcctgcccggaaaagagaaggtggtggcggagctgaaaaacctggcg
gccgatgccgaccacatctatctcgcgaccgaccttgaccgcgaaggggaagccattgcc
tggcacctgcgggaagtgatcggtggtgacgacaagcgtttcagccgcgtggtgttcaac
gaaatcaccaaaaatgcgattcgtcaggcatttgaaaagccgggcgaactgaacattgag
cgcgtgaatgcgcagcaggcgcgccgctttatggaccgcgtagtggggtatatggtttcg
ccactgctgtggaagaaaattgcccgcggtctctctgccggccgcgtgcagtcagtcgcg
gtacgtctggtggtggaacgcgaacgcgaaatcaaagcgtttgtaccggaagagtactgg
gaaatcgacgccgatttcgcgacgccgaaaggcgatgcgctggcgatgcgtgtgacgcat
cagaatgacaaagccttccgcccggtaaaccgtgaacagacacaggcggcggtggccatc
ctcgaaaaagcccggtttgccgtgctcgatcgggaagacaagccgaccagcagcaagcct
tctgcaccctttattacgtccacgctgcagcaggccgccagtacgcgccttggttttggc
gtgaaaaaaaccatgatgatggcacagcgcctgtatgaagctggccacatcacctatatg
cgtaccgattctaccaacctgagccaggacgcggtggccatggcgcgcggctatgtggag
agcagcttcggtaaaaaatacctgccagacgcgccggtcacctatgccagcaaagagaat
tcacaggaagcgcatgaagcaattcgtccttccgatgtcaatgtggcggcagagcagctg
aaagatatggaagcggatgcgcagaagctgtaccagctgatctggcgtcagtttgttgcc
tgtcagatggtgccggcgcaatatgattccaccacgctgaccgttgcggcgggtgacttc
cggctgaaagccaaaggccgtacgctgcgctttgacggctggacgaaagtgatgccggca
ctgcgtaaaaacgacgaggatttaacgctgccgccggttaacgtgggtgacacgctggat
ctgaccgcgctgcgtccgggccagcatttcaccaagccaccggcacgtttcagcgaagcg
tcgctggtgcgcgaactggaaaaacgcgggattggtcgtccgtcgacgtacgcgtcgatc
atttccaccattcaggatcgcggttacgtgcgggtggaaaatcgccgtttctatgccgag
aaaatgggtgaaattgttaccgaccggctggaagagaacttccgtgagctgatgaactat
gacttcaccgcacacatggaagacagcctggaccaggtcgccaataacgaagcggaatgg
aaagcggtgctggactccttcttcagtgatttcagccagcagctggatcaggctgaaaag
gatccggaagaagggggcatgcagcctaatcagatggtgctgacctcaattgactgtccg
acctgcggacgcaaaatggggatccggaccgccagcaccggtgtgttcctggggtgctcg
gggtatgcgctgccgccgaaagagcgctgcaagcagaccatcaacctgattccggaaaac
gaagtgctgaacgtgctggaaggcgatgatgccgaaaccaatgcgttgcgtgcccgtcgc
cgctgccagaaatgcggcaccgccatggacagttacctcatcgataacagccgtaagctg
cacgtatgtggtaacaacccggagtgcgacggctacgaaattgagcagggcgagttccgc
atcaagggctatgatggtccgattgtcgagtgtgaaaaatgtggctctgaaatgcacctg
aaaatggggcgtttcggcaagtacatggcctgcaccaatgacgagtgtaaaaatacgcgt
aagattctgcgcaatggtgaagtggcgccgccgaaagaagatccggtgccgctgccggag
ttaccttgcgaaaaatcggatgcctattttgttctgcgtgatggcgcagcaggcgtgttt
ctggcagccaataccttcccgaaatcgcgcgagacccgcgcgccgctggtggaggagctg
cagcgctttgccgatcgcctgcctgagaagctgaaatatctggcagaagcgccggccgtc
gatccggaaggcaataaaacgctggtgcgctttagccgtaaaaccaaacagcaatatgtc
gcctctgaaaaagagggtaaagcgacgggctggtccgtgttttacgttgacggcaaatgg
caggaagtgaaaaagtaa
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