Pseudoalteromonas donghaensis: D0907_16615
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Entry
D0907_16615 CDS
T05890
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pdj
Pseudoalteromonas donghaensis
Pathway
pdj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D0907_16615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdj03019
]
D0907_16615
Enzymes [BR:
pdj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D0907_16615
Messenger RNA biogenesis [BR:
pdj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D0907_16615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
CMS1
AAA_19
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AXV66950
LinkDB
All DBs
Position
unnamed1:66409..67710
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AA seq
433 aa
AA seq
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MNFKSFSFSSELLQALEELNFHTLTPVQRSAIPAVRKGKDVLASAQTGTGKTAAFALPLI
QKLSESTLSDNNAPSALVLAPTRELAEQIANNVKAFAKYTALKTVCLFGGVNLAGQANDL
KAGVDIVVATPGRLLDHLRLGNISLANVKHLVLDEADRMLDMGFITDMQTVINGCDETRQ
ILLFSATYPAAIKQFASKVLKQPEIIRVDQTNSTAETVQHVVYPVEERRKQELLSELIGK
KNWQQVLVFVNMKETADELVKELNLDGIPAAVCHGDKTQGNRRRALREFKEGKVRVLVAT
EVAARGIDIEGLPRVINIDLPWLAEDYVHRIGRTGRAGKPGQAISFVSREEENTLFDIEK
LIGQRINRIVLPGYEVSNREVLIDKIGKKPSHLRRSRSNKPSGQATGEARAKNRSRIAKV
RKSLKGNKLSLKK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgaactttaaatcgtttagtttttcttctgagctcttacaggcattagaagaacttaat
ttccatacgcttactcccgttcaacgcagtgcaattcctgcggtacgaaaagggaaagat
gtacttgctagcgcacaaacaggcaccggtaaaaccgctgcgtttgcgctgccacttatt
caaaaattatctgaatcaaccttaagtgataacaatgcgccgagcgcacttgtgcttgct
ccgacgcgtgaacttgctgagcaaatcgccaataacgttaaagcgtttgctaaatacacg
gcactaaaaacagtgtgtttatttggtggtgttaatttagccggacaagcaaacgatctt
aaagcgggtgttgatatcgttgtggcgacacctggtcgtttattagatcatcttcgtttg
ggtaatatcagcttagcaaatgtaaagcacttggttcttgatgaagcagaccgtatgctc
gatatgggttttataactgatatgcaaacggttataaacggctgtgatgaaacacgtcaa
attttactcttttcagcaacgtaccccgcggcgataaaacagtttgcaagcaaagttctt
aagcaacctgaaattattcgtgtcgatcaaacaaacagtacagcagaaaccgtacagcac
gttgtttatcctgttgaagagcgccgtaaacaagagcttctttcagaactgatcggtaag
aaaaattggcagcaagtgttagtgttcgtcaacatgaaagaaacagccgatgagctcgtt
aaagaattgaaccttgatggtattcctgcggctgtgtgccatggtgataaaacccaaggt
aaccgacgtcgtgcactacgtgaatttaaagaaggtaaagtacgtgtgcttgttgcaact
gaagtcgcagctcgtggtattgatattgaaggccttccacgagtgatcaatattgattta
ccttggcttgctgaagactatgtacaccgtattggtcgtacaggacgtgctggtaaaccg
ggacaggcaatctcatttgtaagtcgcgaagaagagaatacgttattcgatattgaaaag
ttaattggtcaacgtattaaccgtatagtgctgccgggttatgaagtaagtaatcgtgaa
gtcctgatcgacaaaattggtaaaaagccatctcatttacgtcgtagccgaagcaataag
ccatcagggcaggcaaccggcgaagccagagccaagaaccgctcgcgtattgctaaagtg
agaaaatcacttaaaggcaataaacttagcttaaaaaaatag
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