Phytobacter diazotrophicus: HHA33_19010
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Entry
HHA33_19010 CDS
T06586
Symbol
ldtD
Name
(GenBank) L,D-transpeptidase
KO
K21470
L,D-transpeptidase YcbB
Organism
pdz
Phytobacter diazotrophicus
Brite
KEGG Orthology (KO) [BR:
pdz00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pdz01002
]
HHA33_19010 (ldtD)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pdz01011
]
HHA33_19010 (ldtD)
Peptidases and inhibitors [BR:
pdz01002
]
Cysteine peptidases
Family C82
HHA33_19010 (ldtD)
Peptidoglycan biosynthesis and degradation proteins [BR:
pdz01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
HHA33_19010 (ldtD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
QJF18505
LinkDB
All DBs
Position
complement(3971995..3973854)
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AA seq
619 aa
AA seq
DB search
MLLKKSYGRRMSTLSLCLAFAFAPLFSAQALADEPEVVPVDSSATLGDQPTALSQPLEQS
PATAMMAGLQPYPAADAPANARSALQALLPANWTPVYMDSLSALYAAREMKPMWDNRDAV
QAFQQQLAEVAIAGFQPQFTTWVGLLTDPNISGMARDLVLSDAMMGYLHFVAGIPVKGNR
WLYSSKPYTLETPPLSVINQWQLALDKGNLPQFIETLAPHHPQYAAMHQSLLTLVADNSP
WPQLTSTVSLRPGQKSRDVPALREILQRSGMMDDAPKIALPGDDATSSVVSPSAIAVDTA
GTTTAQLTKKAKPASTLSSDYDRQLVAAVKRFQAAQGLHADGVIGQSTRDWLNVTPAQRA
GVLALNIQRLRLLPGKLSTGIMVNIPEYSLVYYLNGNQVLASRVIVGRPDRKTPMMSSAL
NNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTVLRGWNSKEAIDPTMVDWATITP
SNLPFRFQQAPGAQNSLGRYKFNMPSSDAIYLHDTPNHNLFQKDARALSSGCVRVNKASE
LANMLLQDAGWNDTRISDALKQGDTRYVNIRQNIPVNLYYLTAFVGEDGRTQYRTDIYNY
DLTARSGAQILAKAEQLIR
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgttgcttaagaaatcgtatggtcgtcggatgtcgacattgagtttatgtctggcattc
gcatttgctccgctgtttagcgctcaggccctggccgatgagcctgaggtggtacctgtt
gacagttccgcgacgcttggcgatcaacccacggcattatcgcagccgctggaacagtcg
cctgcgacggcaatgatggcaggcttgcagccttatccggcagcagatgcgcctgctaac
gcgcgtagcgcattgcaggcactcttgcctgctaactggacaccggtctacatggattcg
ctttccgcgttgtatgccgcgcgtgaaatgaagccgatgtgggataatcgtgatgccgtt
caggctttccagcaacaactcgccgaagtcgcgattgccggtttccagccgcaattcacg
acctgggttgggctgttgaccgatccgaatatctcaggaatggcgcgggatttggtctta
tcggacgccatgatgggatatctgcatttcgtcgccggtattccggtgaaaggcaaccgc
tggctctacagcagtaaaccttacacgctggaaacaccgccgctgtcggtaatcaatcag
tggcaattagcgttggataaaggcaacctgccgcaatttatcgaaacccttgcacctcat
catccgcagtatgctgcgatgcatcagtctttactgacgctggtggcagacaattcaccg
tggccgcagttgaccagtaccgtttcactgcgtcccggacagaagagcagggatgtaccc
gcgctgcgtgaaatcctgcaacgtagcggcatgatggatgatgcgccgaaaatcgcgctg
cctggcgatgatgcaacgagcagcgtcgtcagcccgtctgccatcgcggttgatacggcg
ggaacaacaacggcgcagttgaccaaaaaagcgaaaccagcaagtacgctcagcagcgac
tatgaccgccagttagttgccgcagtcaaacgcttccaggccgctcagggtctgcatgcc
gacggcgtgattgggcagtcgacccgcgactggttgaatgtaaccccagcccagcgcgcc
ggggttctggcgctgaacattcagcgtctgcgtttgctgccgggtaaactctccacgggg
attatggttaacatcccggagtattcgctggtctattatctgaacggcaaccaggtgctg
gcctcccgcgtgattgtcgggcgaccggatcgcaaaacgccgatgatgagcagtgcgctg
aataacgtggtggttaacccgccgtggaacgttccaccgacgctggcacgcaaagacatt
ctaccgaaagtatggaatgacccgggctatctggaacggcatggttataccgtgctgcgt
ggctggaacagtaaagaggctattgacccgacgatggtggattgggcaaccatcacgcca
tctaatctgcctttccgcttccagcaggcgccgggcgcgcaaaactcgctcggccgctat
aagttcaatatgccgagttctgacgctatctatcttcatgacacacccaaccataatctt
ttccagaaagatgcgcgagcgttgagctcaggctgtgtgagggtgaataaagcctctgag
cttgccaatatgctattacaggatgcgggatggaacgacacgcggatttccgatgcatta
aaacaaggagatacccgttacgttaatatccgtcaaaatataccggtgaatctttattat
ttgaccgcatttgttggcgaagatggtcgtacccaatatcgtacagatatttacaattat
gatctgacggcgcgatctggcgcacaaatcctggcgaaagccgaacaattaatcaggtaa
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