Pseudoalteromonas espejiana: PESP_b0789
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Entry
PESP_b0789 CDS
T04989
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pea
Pseudoalteromonas espejiana
Brite
KEGG Orthology (KO) [BR:
pea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pea03016
]
PESP_b0789 (rnd)
Enzymes [BR:
pea01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PESP_b0789 (rnd)
Transfer RNA biogenesis [BR:
pea03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PESP_b0789 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DNA_pol_A_exoN
Myb_Cef
Motif
Other DBs
NCBI-ProteinID:
ASM52300
LinkDB
All DBs
Position
II:709309..710439
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AA seq
376 aa
AA seq
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MQYQLIETQNQLNTFVEQIKNKPILAIDTEFMRRRTLYPEVALIQVYDGEHLALIDPLAE
LSLFDFWEILKDPRVLKVLHSPSEDIEVFQKYAGFMPAPLFDTQFALQLLGEGNCMGFAL
MVKELLGIEIDKSESRTNWLQRPLTKKQLDYAAADTFHLLPCFELIIKRINDAELFEIVI
NESELIANKRAFQTPDELLYKDIKNAWQLKPHELAVLKELAVWRRNKAIRKNLALNFVLK
EHNMTEIAKRGPSSLNSLRQIPGVESMEVNRSGVEILKCIETAKAIPTDEHPPVLKRLID
FPAYKKVAKDIKQKITKVAKEQGIPEDVMASKKQINQLISWSWKLTDAQKVNHIKPDLLN
SWRYSFVKETLKEWDK
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
gtgcaataccaattgatcgaaacacaaaatcaactcaatacatttgttgagcaaataaaa
aacaaaccaattttagccatagacaccgagtttatgcgccgccgtactttgtaccctgaa
gttgcacttatccaagtatatgatggtgagcatttagcactaattgacccgcttgctgag
ttatcgttatttgatttttgggaaatattaaaagatccacgcgtacttaaagttttacat
tcaccgtctgaagacattgaagtatttcaaaaatacgcaggctttatgcctgcaccatta
tttgatactcaatttgctttgcaactattaggtgaaggaaactgtatgggctttgccctt
atggtgaaagagttacttggtattgaaatagataaaagtgagtcacgtactaattggcta
cagcgtccgctaactaaaaaacagctagattatgcagctgccgatacttttcatttacta
ccgtgttttgaactaattattaaacgaattaatgacgctgaactatttgaaattgtaata
aatgaaagcgaactgattgctaataaacgtgcatttcaaacaccagatgaattgttatat
aaagacattaaaaatgcgtggcaattaaaaccacacgaacttgcagtattaaaagagctc
gccgtttggcgtcgtaacaaagcgattcgtaaaaatttagcacttaactttgtgcttaaa
gagcacaacatgactgaaattgccaaacgcgggccatcgagtttaaattcgcttaggcaa
attcccggtgttgagtcgatggaagttaatcgctctggcgtagaaatacttaaatgtatt
gaaaccgcaaaggcaataccgactgatgagcatcctcccgttttaaagcgtttaattgac
tttcctgcttataaaaaagttgcgaaagacattaaacaaaaaattactaaagtcgcaaaa
gagcagggtatccctgaggatgtaatggcttctaaaaagcaaattaatcaacttatcagt
tggagttggaagcttaccgatgcgcaaaaagtaaatcatatcaaacccgatttacttaat
tcatggcgctacagctttgtaaaagagactttaaaagagtgggataagtga
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