Pectobacterium parmentieri SCC3193: W5S_0142
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Entry
W5S_0142 CDS
T02514
Name
(GenBank) YD repeat protein
Organism
pec
Pectobacterium parmentieri SCC3193
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
PAAR_motif
DUF4595
RHS
Motif
Other DBs
NCBI-ProteinID:
AFI88281
UniProt:
A0A0H3HWT4
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Position
167185..171471
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AA seq
1428 aa
AA seq
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MLDDILSRIARVGAMHAGNRPTLPPDLPEPGQGKPPTSPGKPIKHSSFLGALLGAVAGAL
VAAAVAAVAVALVGVTGGLAIALVGGLAALGAGSLISAVSGRVSAMVDSASPPSGQVDGG
SKTVFVEGNPVSRAEIDAVKCAKHNGPQLIAQGSETVFVEGYYAARVDDKAVCGATIKEG
ASTVFFGSGQASPLKVQEEFSGWQKALLIAVEFLVPPSKGLFRGLGRLFTGKGLVGVLRG
AKAAAKYLARVPGKTRCAATAFIHSKGLARFSHAKAAFKADPVYIASGEVIESRTDIELG
QTIPLVFERTYRSGSPHTGLLGQGWHDSWSEVATVDRTDKGDIQVTLTLAQGYDIDFTFG
IGATVVYCAEYPEFKLVKRHSGFHLWHRDSQTWRAFTVKQDNRLLLSAITDNHHNRIDFL
RDPKGYLRKIRHGDGIELLLVWQGEFLSQIQRIDGGQKTVLAEYRQDERGRLVEADAAHA
YHLFYDYDSHHRLTRWHDNDQTWARYEYDHQGRCIYTTCADGYLTANFEYLADRVVMIDG
LGQRHEYGFNDLYLMAWEKSPLGHLTRYEYDDVGNLLREISPAGRAVEFAYLGDSGLVST
FTDGSGHAWHYAYDDHERLIGITDPLGRRWVWQYDNNGNPLSLTGPDASEMRFAWNRYGL
LTEVSDQNGHVQASLFYDHRQRLLSATDAEARTQQLRYDQQDRLTTWTRPDGATYRLGYR
RASWRLPEQLIRPDEKEEKRQYDKHNNLLNYTDGNGAVWQQTYGPFDLLTSRTDAEGRTW
QYDYDKDSQQLIGVTAPDGNRWQWWLDADGRVIRERDMAGTETHYGYDEDGHCISVRNGE
GEIRHFLYDGRGLLIKETAPDDTLYYRYDAAGRLTDVTSTTSHVQLEYDERDRVVQEHNS
GTAIRRHYQDASHTVTRSLHWEGEEDSAALTSTFCYRATGELHQVQLPDGAELTLTHDAA
GREAIRHSPGGFIQRREYDTMGWLTREMSGQTVDGRLQPVQTREYLYDSAGNLTGTRRNR
EAAGYRLDASGRVLSVLSGGAGRTVNTEEEYRYTRSGLPQDATRLTDWQAGRLTQQDNTH
YQYDKAGRLIRRQVVQPGYRPQVWHYRWDSRNQLRVVDTPNGERWLYRYDPFGRRIGKRC
DQTAEAIRYLWDGDQIAEVRHYRDNQLVSRRHWVHNGWELLVQQRQNADESWETDFVTSG
HNGEPQAIFNQTGELRWQAPRANLWGQRYTENAEKYDPGLAFAGQYRDDESGLCYNRFRY
YDPNGGCYISPDPIGVLGGESNYGYVHNPVSWIDPKGLAGCNIVHRAVTPEQAASIRAGN
GISRPTPYHRTTPTQHVAGAPHSRDPWISTTRSQSTAEYFATHGGTQAANPIVKIDLSKI
PSDKILDVSNAQKAAEHLQTPFTRNVAAAHQEVLIFGEIPSEAIIGFL
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgcttgatgacatcctctcgcgcattgcgcgggttggcgcgatgcatgcggggaatcgc
cccaccctgccacccgatttgcctgaaccggggcagggtaaaccgccgacctcaccgggc
aagcctatcaaacacagcagctttctgggggcgttgctcggtgcggtggccggggcactc
gtggccgccgccgtcgcggcggtggccgttgccctggtgggcgtcactggcgggctggcc
attgctctggttggtgggctggcggcactgggtgcagggagtctgatatctgccgtcagt
ggtcgggtgtcggccatggtcgacagcgcttcgccgccatcagggcaggttgatggcggt
tcgaagaccgtttttgttgaaggcaatccggtctcccgtgcggaaatcgatgcggtgaag
tgcgctaaacacaatggtccgcaactgattgcgcagggcagtgaaacggtgtttgtcgag
ggatactatgccgcacgggtggacgacaaggccgtgtgcggtgcgaccatcaaggaaggg
gcctcgacggtgttctttggctccgggcaggcctcgcccctcaaggtgcaggaggagttc
agcggctggcagaaagcgttactgattgcggtggagtttctggtgccgccgagcaaggga
ctattcagaggattgggccggttatttaccggaaaagggcttgtcggggtactccggggg
gctaaagcggcggctaaatatctagcccgggtacccggaaaaacccgctgtgcggcaacg
gcatttattcacagcaaaggactggcccgcttttctcatgccaaagcggccttcaaagcc
gacccggtctacatcgccagcggcgaggtgattgaaagccgtaccgatatcgaactgggg
cagaccattcctctggtatttgagcgcacctatcgctccggtagccctcacaccggcctg
ctgggacagggctggcacgatagctggagtgaagtggccaccgttgaccgcaccgacaag
ggtgacatccaggtgacgctcacgctggcgcagggttacgacatcgacttcaccttcggg
ataggggcaacggtggtgtactgcgccgaataccccgaattcaaactggtgaaacgccat
agcggctttcatctgtggcaccgcgacagccagacctggcgggcgtttaccgtcaaacaa
gataaccgactgctgctgtcggcgataaccgacaaccaccataaccgcattgactttctg
cgcgaccccaaaggctacctgcgcaagattaggcacggcgacggcatcgagctgctgctg
gtgtggcagggagaatttctcagccagatacagcgtatcgacggcgggcaaaaaaccgtg
ctggccgaataccggcaggatgaacgggggcgactggttgaggccgatgcggcccatgcc
tatcacctgttctacgactacgacagccatcaccgcctgacgcgctggcacgataacgac
cagacctgggcgcggtatgaatacgaccatcagggacgctgtatctacaccacctgtgcc
gatggctacctgacggcgaatttcgagtacctggctgaccgcgtggtgatgattgacggg
ctgggacagcgccatgaatacggcttcaacgacctgtacctgatggcgtgggaaaaatct
ccgctcggccatctcacccgctatgagtatgacgatgtgggcaacctgctgcgggaaatt
tccccggcgggtcgggcagtggaatttgcctatctgggcgacagcgggctggtcagcacc
tttaccgacggcagcggccacgcgtggcactacgcctatgacgaccacgagcgacttatc
ggtattaccgacccgctggggcgccgttgggtctggcagtacgacaataacggcaacccg
ctgagtctgaccgggccggatgcgagcgaaatgcggtttgcctggaaccgctacggcctg
ctgaccgaagtgagcgaccagaatggacacgtgcaggccagcctgttttacgaccaccgt
cagcgcctgttgagcgccaccgatgcggaagcccgcactcagcaactgcgctacgaccag
caggacagactgaccacctggacacgcccggatggtgccacctatcggctgggttatcgc
cgggcaagctggcgactgccggagcaactgatacgcccggacgagaaagaggaaaaacgc
cagtacgacaagcataacaacctgctgaactacaccgacggcaacggtgcggtctggcag
caaacctacggcccgttcgacctgctgacttcacgcaccgacgctgaaggccgcacctgg
cagtacgactatgataaagacagtcagcaactgattggtgtcaccgccccggatggcaac
cgctggcagtggtggctggatgcggacggacgggttatccgtgagcgggacatggccggt
acggaaacccactacggctatgacgaagacgggcactgcatcagcgtgcgcaatggcgaa
ggggaaatccgccactttctgtacgacgggcgcggcctgcttatcaaagaaaccgcgccg
gacgatacgctgtattaccgctatgatgcggccggtcgactgaccgacgtgacatcgacc
accagtcatgtccagcttgaatatgacgagcgtgaccgggtggtacaggagcataacagc
ggcacggcaatccgacgccactatcaggacgcatcgcacaccgttacccgcagcctgcac
tgggaaggcgaagaggacagcgcggcactgaccagcaccttctgctaccgcgccacgggc
gaactgcatcaggtgcagttgccggatggcgccgagctgacactgactcacgatgcggct
gggcgggaagccatccgccacagcccgggcggttttatacagcggcgtgaatacgacacg
atgggctggctgacgcgggagatgagcgggcagacggttgacggtcgcctgcagccggta
cagacgcgggaatacctctacgacagcgcgggtaacctgacgggcacccggcgcaaccgt
gaggctgcaggttaccgactggatgccagcggacgggtgctgtcggtactgagcggtggt
gcggggcgcaccgtcaacaccgaagaggaataccgctacacccgcagcgggctgccgcag
gatgcgacaaggctgaccgactggcaggccggacgcctgacccagcaggacaacactcac
tatcagtacgacaaggccgggcgactcattcgccggcaggtggtgcaaccgggctatcgg
ccacaggtgtggcactaccgctgggacagccgcaatcagctcagagtagtggacacccca
aacggtgaacgctggctctaccgctacgacccgttcggacggcgcatcggcaaacgctgc
gaccagacagccgaagctatccgttatctgtgggacggtgaccagatagcggaggtgcgg
cactatcgcgacaatcaacttgtctcacggcgccactgggtgcacaacggctgggaactg
ctggtgcagcagcgtcagaacgccgacgaaagctgggaaacggactttgtcaccagcggc
cataacggtgaaccgcaggctattttcaaccagaccggtgaactgcgctggcaggccccc
cgcgctaacttatggggccagcgctatacggaaaacgctgaaaaatatgatccggggctg
gcgtttgccggacaataccgtgacgacgaaagtggcttatgctataaccgtttcaggtat
tatgacccgaacggcggttgttatatctcgcctgaccctataggggtgttgggtggggaa
agtaattacgggtatgttcataatcctgtaagttggatcgatccgaaagggttagctgga
tgtaatatagtccatagggcggtgactcctgaacaagcagcaagtatccgggcaggcaat
ggaatatcaaggccgactccatatcatagaacgacaccgactcagcatgtagcaggagca
ccgcactcgcgtgatccgtggatatcaacaactagaagtcaatcaacggcagaatacttc
gccactcatggtggaacccaagcagcaaatccaattgttaagatagatctgtctaaaatt
ccgagcgataagattttagatgtatcaaacgctcaaaaggctgcggaacatttgcagact
ccattcacccgaaatgtagcagcagcccaccaagaggtattaatctttggagaaatacca
tcggaagcgataattggatttttatag
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