Candidatus Pelagibacter giovannonii: E5R92_03030
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Entry
E5R92_03030 CDS
T06537
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
peg
Candidatus Pelagibacter giovannonii
Brite
KEGG Orthology (KO) [BR:
peg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
peg03021
]
E5R92_03030 (rpoH)
Transcription machinery [BR:
peg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
E5R92_03030 (rpoH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_25
Sigma70_r3
BLI1
YgfZ_barrel
HTH_11
Motif
Other DBs
NCBI-ProteinID:
QIZ20758
UniProt:
A0A6H1Q1R0
LinkDB
All DBs
Position
547672..548553
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AA seq
293 aa
AA seq
DB search
MNSNLPALSNEGGLSAYLEQIKKFPMLAAEEEYMLAKNWKATGNVKAAEKLVTSHLRLVA
KIAMGYRGYGLPVNEMISEGNVGLMQAVKKFEPEKGFRLATYAMWWIRASIQEYILRSWS
LVKIGTTTAQKKLFFNLKKIKNQIAPQSEGDLRPEHVSEIANKLDVNKEEVISMNRRLSG
KEFSLNAQVGEDGDEWQDWLVDKELDHDLKFAHQEEMGQRQSLLKDSIKILNEREREILY
SRRLNDEPTTLEDLSKKYKISRERVRQIENKAFEKLQKHMLLSAKSKNLLPIN
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
ataaatagtaatcttcctgcactttctaatgaaggtggtttgtctgcttatctagagcaa
attaaaaaatttcctatgttggcagcagaagaagaatatatgcttgcaaaaaattggaag
gcaacaggaaatgttaaagctgcagaaaaacttgttactagccatctaagactcgttgca
aagattgcgatgggttatagaggatatggtcttccagtaaatgaaatgatttcagaagga
aatgttggactaatgcaagctgttaaaaaatttgaacctgagaaaggatttagattagca
acttatgcaatgtggtggattagagcttctatccaagaatatattctaagatcttggagc
ttagtaaaaataggaacaacaactgcacaaaaaaaattattttttaatttaaagaaaatt
aaaaaccaaatcgctcctcagtctgaaggtgatttaagacctgaacatgtaagtgaaatt
gctaacaagttagatgttaacaaagaagaagtaatttcaatgaacagaagactttcaggc
aaagaattttctttaaatgcgcaagttggagaagatggtgacgaatggcaggactggttg
gtagataaagaacttgaccatgatttaaaatttgcacatcaagaagagatgggtcaaaga
caaagtttacttaaagattctataaaaattcttaatgaaagagaaagagagattttatac
tctagaagattaaatgatgagcctacaacgcttgaagatttaagcaaaaaatacaaaatt
agtagagagagagttagacaaattgaaaacaaagcatttgaaaagcttcaaaaacacatg
ttgctatctgctaaatctaaaaatttacttccaataaactaa
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