Pedobacter sp. KBS0701: FFJ24_022490
Help
Entry
FFJ24_022490 CDS
T06361
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pek
Pedobacter sp. KBS0701
Pathway
pek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FFJ24_022490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pek03019
]
FFJ24_022490
Enzymes [BR:
pek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FFJ24_022490
Messenger RNA biogenesis [BR:
pek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FFJ24_022490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Flavi_DEAD
Z1
Motif
Other DBs
NCBI-ProteinID:
QDW28318
LinkDB
All DBs
Position
5532736..5533908
Genome browser
AA seq
390 aa
AA seq
DB search
MAMGYKSATPIQEQAIPVILDNHDLIACAQTGTGKTASYLLPVMDKISKAADRHNNTLIL
APTRELAQQIDLQVEALAYFTNISSLAVYGGGDGIAYEQQKRSMRDGVDIIIATPGRLMA
HLSSGVLKLEHLQHLILDEADRMLDMGFYDDIIRIISYLPKKRQTLLFSATMAPKIRTMA
GKILHEPKQITISIAKPAEGIDQQAYNIHDQQKQALLTDIFKSGQYKSSIIFVSTKEKVK
ALYKTFKGLGIKAEAFHSDLGQKEREDILLAFKNRRLPILIGTDVLSRGIDVEGIDLVIN
YDVPGDPADYVHRIGRTARAATKGTAITLVNGRDKRKFDNIEKLIEKEVPRMPLPESIAA
MEITHVEEKKPQHKNRKKVWQKKKKPKPSA
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atggccatggggtataaaagcgctactccaatacaagaacaagccatcccggtaatttta
gataatcatgatctgattgcctgcgctcaaactggtacaggaaaaacagccagctacctt
ttgcctgtaatggataaaattagcaaagctgccgatagacataacaatactttaatcctt
gcgccaacacgcgagcttgcacaacagattgatttacaggtagaagccctggcttatttt
accaatatcagttctttagccgtttacggcgggggagatggtattgcttacgagcagcaa
aaacgttctatgcgcgatggcgtggatattattattgccactcctggcagattaatggca
catttatcttcaggtgtgttaaaactggaacatttgcagcatttgattttggatgaagca
gatagaatgttggatatgggtttttacgatgacataatccgcattattagctatctgcca
aagaaaaggcaaacgcttttgttttcagctacgatggcgccgaaaataagaaccatggcg
ggtaagatcttgcacgaaccgaagcagattaccatttcaattgctaaacctgccgaaggg
attgatcagcaggcttataatatccatgatcaacaaaaacaggcgctattaactgatatt
tttaaaagcggacagtacaaaagcagtatcatttttgtttcgaccaaggaaaaagtaaaa
gctttatacaaaacctttaaaggattaggaattaaggccgaagcttttcactccgactta
gggcagaaagaacgtgaagatattttactggctttcaaaaaccgtagactaccgattttg
attggaaccgatgtattatcgaggggtattgatgtggagggtatagatctggtaatcaat
tatgatgttcccggcgatccggccgattatgtacaccgtattggccgtacagcaagagct
gcaaccaaaggaacagccattacattggttaacggaagagataagcggaagttcgataac
atcgaaaaattaatcgaaaaagaagttccccgtatgccactgccagaaagcatagctgca
atggaaattacgcatgtagaggaaaagaagccacagcataaaaacagaaaaaaggtttgg
cagaaaaagaaaaaaccaaaaccttcagcttaa
DBGET
integrated database retrieval system
