Pantoea eucalypti: EE896_09215
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Entry
EE896_09215 CDS
T06282
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pey
Pantoea eucalypti
Brite
KEGG Orthology (KO) [BR:
pey00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pey03019
]
EE896_09215 (hrpA)
Enzymes [BR:
pey01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EE896_09215 (hrpA)
Messenger RNA biogenesis [BR:
pey03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EE896_09215 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
T2SSE
PhoH
nSTAND3
HA2_N
NACHT
AAA_23
ResIII
AAA_30
SLFN-g3_helicase
NAD_binding_9
AAA_16
TsaE
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QGF27012
LinkDB
All DBs
Position
1991169..1995071
Genome browser
AA seq
1300 aa
AA seq
DB search
MSSPDTSPLAALWSRLDGLMLRDRQRLQRRLQGARKTKNPEAQQGIASELALEFVAAEQR
VAQRRAATPAITFPDNLPVSQKQQDIAEAIRDHQVVIVAGETGSGKTTQLPKICLALGRG
VTGLIGHTQPRRLAARTVANRIADELSTSLGGCVGYKVRFNDQVSDLTQIKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKVIITSATIDPQRFSRH
FNNAPVIEVSGRTYPVEVRYRPVVEEADDGDRDQLQAIFDAVDELGRESRGDILIFMSGE
REIRDTADALNKRDLPHTEVLPLYARLSNAEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSFRTKVQRLPIEPISQASANQRKGRCGRVSDGICIRLYAEDDFLSR
PAFTDPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGALTLNEE
NGHYKLTGSGRQLAQLPVDPRLARMVLEAQKFGCVREVMIITAGLSIQDPRERPADKKQA
SDEKHRRFADKDSDFLAYVNLWNYLADQQKALSGNVFRRQCKTDFLNYLRVREWQDIYTQ
LRQVVRELGIPVNSEPAELQPVHCALLSGLLSHIGQKDADKQEYTGARNTRFAIFPGSGL
FKKPPKWAMVAELVETSRLWGRTAGRIEPEWIEPLAQHLIKRSYSEPHWEKSQGAVMAAE
KVTLYGLPIVAARKVNYGSIDPTLSRELFIRHALVEGDWQTRHAFFRANQKLRSEVEDLE
HKSRRRDIMVDDETLFAFYDQRIGKEVVSAKHFDSWWKQASRENAELLNFDKQMLIKEGA
DKVSQLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEDSGFEWQIPGVRR
ELIIALIKSLPKPLRRNLVPAPNYAEAFLGRVKAMEMPLLDALSREFRRMTGVTLERENW
QWEQVPDHLKMTFRVVDEHNRKLLEGKDLTALKAQLKDKVQETLSKVADDGLEQSGLHIW
SFGDLPRSYEQKRGSYQVKAWPALVDEKESVAIRLFDSEQEQQKMMWRGQRRLLLLNVPS
PVKYLHEKLPNKAKLGLYFNPYGKVLELIDDCIACGIDKLIGEAGGPAWDQGAFEQLRDK
VRGELNETVVTIAQQVEQILTAVFNINKRLKGRVDMTMALALSDIKAQVNGLVYRGFVTG
NGWQRLADTLRYLNGIERRLEKLPADPHSDRARMLKVQAVEQAYQAWRNKLPPQRQDDEE
VQNIRWMIEELRISYFAQQLGTPYPISDKRILQTMEQIAA
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcacccgatacttccccactggcagcgctctggtcacggctcgacggtttaatg
ctgcgcgatcgccagcggctgcagcgccgcctgcagggagccagaaaaaccaaaaatcct
gaggcgcagcagggcattgccagcgagctggcgctggagttcgtcgccgccgaacagcgc
gtggcccagcgccgcgcggctaccccagcgattacgttcccggacaatctgccggtgagt
cagaagcagcaggatattgctgaggcgattcgcgatcatcaggtggtgattgtcgctggt
gaaaccggttcaggtaaaaccacccagttgccgaaaatttgtctggcactgggacgcggt
gttaccgggctgattggccatactcagccgcgccgtctggccgcgcggaccgtggcgaac
cgcattgccgatgagctcagcacctcactgggcggctgtgtcggctacaaagtgcggttc
aacgaccaggtcagcgatctgacgcagattaaactgatgactgacgggattctgctggcg
gaaatccagcaggatcgcctgctgatgcaatatgacaccatcatcattgatgaagcccat
gaacgcagcctgaatatcgacttcctgctcggttacctgcgtgagctgttgccgcgccgc
cccgatctgaaggtcatcatcacttccgctaccatcgatcctcagcgcttctcccgtcat
ttcaataatgcgccggttattgaagtttctggccgcacgtatcctgttgaagtgcgctat
cgtccggtggtcgaagaggcggatgatggcgaccgtgatcagctgcaggcgatttttgat
gcggtggatgaactgggacgggaaagccgtggcgatatcctgatctttatgagcggcgag
cgcgaaatacgcgacaccgccgacgcgctcaacaaacgcgatctgccgcacaccgaagtg
ctgccactctatgcccggctgtccaatgctgagcagaatcgggtgtttcagtcgcacagc
ggtcgtcgcatcgtgctggcgaccaacgttgcggaaacctcactgacggtgcctggaatt
aaatatgtgatcgatcccggcacggcgcgtatcagccgttacagcttccgcaccaaagtg
cagcgtctgccgattgagcccatatcccaggcgtctgccaatcagcgtaaagggcgctgc
gggcgtgtgtcagacggtatctgtattcgcctctacgcagaagatgacttcctgagtcgt
ccggcctttaccgatcctgaaatcctgcgcaccaacctggcatcggtgatcctgcagatg
acctcgctgggtctgggcgatattgccgccttcccgtttgtggaagcacccgataaacgc
aatattcaggatggtgtccgtctgctggaagagctgggggcgctgacgctgaatgaagag
aacggccactacaagctgaccggatccgggcgtcagctggcgcagctgcccgtggatcct
cgcctggcgcggatggtgctggaagcgcagaaatttggctgcgtgcgcgaagtgatgatt
atcaccgcaggcctgtcgattcaggatccccgtgagcgtccggcagataaaaagcaggct
tcggatgagaagcatcgacgctttgctgataaagactccgactttcttgcctacgtgaat
ctctggaactatctggcggatcagcagaaagcgctgtccggcaatgttttccgtcgtcag
tgcaaaaccgacttccttaactatctgcgcgtgcgggaatggcaggatatctatacccag
ctgcggcaggtggtgcgggaactggggattccggtgaacagcgaaccggctgagctgcag
cccgttcactgtgcgctgttaagtggtctgctgtcgcacatcggtcagaaagatgccgat
aagcaggagtataccggtgcacgcaacacccgcttcgccatcttccctggctccgggctg
tttaagaagccgccgaagtgggccatggtcgcggagctggttgagaccagccgcctgtgg
ggccgcacggcggggcgcattgagccagagtggattgagccgctggcgcagcatctgatt
aagcgcagctacagcgaaccgcactgggagaaatcgcagggcgcggtgatggccgctgaa
aaagtcacgctctatggtctgccgattgtggccgctcgcaaagtgaactatggcagcatc
gatcctacactgagccgtgagctgtttatccgccacgcgctggtggaaggcgactggcag
acgcgtcatgctttcttccgggctaaccagaagctgcgtagtgaagtggaagatctggaa
cacaaatcccgtcgccgcgacatcatggtggatgacgaaacgctgtttgctttttatgac
cagcgcattggcaaagaggtggtgtcggcgaagcattttgacagctggtggaagcaggcc
agccgtgaaaacgccgagctgctgaacttcgacaagcagatgctgatcaaagaaggcgcg
gataaagtcagccagctcgactaccccaatttctggcatcagggcaacctcaaactcagg
ctgagttatcagttcgagccaggtgccgatgcggatggcgtcacggtgcatattccgctg
ccgctgctgaatcaggttgaggatagcggctttgaatggcagatcccaggcgtgcgtcgt
gagctgatcatcgcgctgattaagtcgctgcccaaaccgctgcgccgtaatctggtgcca
gctcccaactacgctgaagcgtttctgggacgcgtgaaggcgatggagatgccactgctt
gatgcgctgtcgcgtgagtttcgccgcatgaccggtgtcacgctggaacgtgaaaactgg
cagtgggaacaggtgcccgatcatctgaaaatgacgttccgcgtggtagacgagcacaac
cgtaaactgctggaaggtaaagatctcaccgcgctcaaggcgcagctgaaagataaagtg
caggaaacgctatcgaaagtggcggatgacgggctggagcagagcggactgcacatctgg
agcttcggcgatctgccgcgcagctatgaacagaagcgcggcagctatcaggtcaaagcc
tggcctgcgctggtcgatgagaaagagagcgtcgccattcgcctgtttgacagcgagcag
gagcagcaaaaaatgatgtggcgcggtcagcgtcgcttgctgctgctgaatgtgccgtct
ccggttaagtatctgcatgagaagctgccgaataaagccaagctcggactctactttaac
ccctatggcaaagtgctggagctcatcgacgactgtatcgcctgtggtattgataagctg
ataggtgaagcgggcggtccggcctgggaccagggcgcgtttgagcagttgcgtgacaaa
gtgcgcggtgaactcaatgagaccgttgtgacgatcgcacaacaggttgagcagatcctc
acggccgtcttcaacatcaataagcgtctgaaaggccgggttgatatgaccatggcgctg
gcattatcggatatcaaggcgcaggtaaatggtctggtctatcgcggctttgtcaccggc
aatggctggcagcgactggccgatacgctgcgttatctgaatggtattgaacggcggctc
gaaaagctgcctgctgacccgcacagcgatcgggcgcgcatgttaaaagtgcaggcagtg
gaacaggcgtatcaggcgtggcgtaataagttgccgccgcagcgtcaggatgatgaagag
gttcagaacatccgctggatgattgaagagctacgtatcagctactttgctcagcagtta
ggcacaccttatcccatttcagataagcgcatcctgcagacgatggaacagatagcggct
taa
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