Pseudomonas eucalypticola: HWQ56_10020
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Entry
HWQ56_10020 CDS
T07251
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pez
Pseudomonas eucalypticola
Brite
KEGG Orthology (KO) [BR:
pez00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pez03032
]
HWQ56_10020 (topA)
03400 DNA repair and recombination proteins [BR:
pez03400
]
HWQ56_10020 (topA)
Enzymes [BR:
pez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HWQ56_10020 (topA)
DNA replication proteins [BR:
pez03032
]
Prokaryotic type
DNA Topoisomerases
HWQ56_10020 (topA)
DNA repair and recombination proteins [BR:
pez03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HWQ56_10020 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QKZ04100
UniProt:
A0A7D5D6E6
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Position
2170694..2173324
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AA seq
876 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASATKEPVKRGKAAAAEA
PALSPKEKARKQLVARMGVDPEHGWKAQYEILPGKEKVIEELRRLAKDADTIYLATDLDR
EGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSTPGELDIDRVNAQQARRFLDRV
VGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKV
RFEVAREKGEAFKPLNEATAMAALEKLKASTYSIVKREDKPTSSKPSAPFITSTLQQAAS
NRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSTDAVDMARSYIEKEFGKQYLPPAPMV
YGSKEGAQEAHEAIRPSDVNTHPTKLAGMERDAERLYELIWRQFLACQMPPAQYLSTTVT
VAAGDFELRAKGRILKFDGYTRVMPQMAKPGDDDVLPEMDQGEVLKLIELDPTQHFTKPP
ARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSESF
SNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKNKLEVAGSADSGMRANQPTPTD
ITCRECGRHMMIRTASTGVFLGCSGYSLPPKERCKATINLVPGDEIAADDEGESESLVLR
GKHRCPICATAMDAYLLDEKRKLHICGNNPDCVGYEIEEGNYRIKGYEGPSLECDKCGSE
MQLKTGRFGKFFGCTNPDCKNTRKLLKSGEAAPPKMDAVKMPELKCEKVNDTYVLRDGAS
GLFLAASQFPKNRETRAPLVIEIIPHKDEIDPKYHFLCEAPKKDPDGRPAVIRYSRKTKE
QYVQTEVDGKPTGWRAFYDGDSWKVEDKRAKEKEPA
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtat
ctgggcaaccaatacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccacgaaagaaccggtaaagcgtggcaaggccgcggccgccgaggca
cctgccttgtcgcccaaggaaaaggcgcgcaagcaactggtggcgcgcatgggcgtcgac
ccggagcatggctggaaggcccagtacgagatccttcccggcaaggagaaggtgatcgag
gagctgcgccggctcgccaaggatgccgacaccatctatctcgcaaccgacttggaccgc
gagggggaagccattgcctggcacctgcgcgaagccatcggtggcgatgacagccgctac
aagcgcgtggtgttcaacgaaatcaccaagaaggccatccaggaggcgttctcgacgccg
ggcgaactcgatatcgaccgggtcaacgcccagcaggcgcgccgcttcctcgaccgcgtg
gtgggctacatggtctcgccgctgctatgggccaagatcgcccgtggcttgtccgccggc
cgtgtgcagtcggtggcggtgaagctggtggtggagcgtgagcgcgagatccgcgccttc
atcccggaagagtactgggagatccacgccgacctgggcaccgcgaagaacgccaaggtg
cgcttcgaagtggcgcgtgaaaagggcgaggcgttcaagccgctcaacgaagccaccgcc
atggcggcgctggagaagctcaaggcgtccacctacagcatcgtcaagcgcgaagacaaa
ccgaccagcagcaagccgtcggccccgttcatcacctcgaccctgcagcaggccgcgagc
aaccgcctgggcttcggtgtgaagaagaccatgatgatggcccagcgcttgtacgaggcc
ggctacatcacctacatgcgtaccgactccaccaacctgtccaccgatgcagtggacatg
gcgcgcagctacatcgagaaagaattcggcaagcagtacctgccgccggcgcccatggtg
tacggcagcaaagagggcgcacaggaagcgcacgaagccattcgtccgtccgacgtcaat
acccacccgaccaagctggccggcatggagcgtgacgccgagcgcctgtacgagttgatc
tggcgccagttcctggcctgccagatgccgcctgcgcaatacctgtcgaccacggttacc
gtggccgccggcgacttcgagctgcgcgccaagggccgtatcctcaagttcgacggttac
acccgtgtcatgccgcaaatggccaagccaggcgatgacgacgtgctgccggaaatggac
cagggcgaagtcctcaagctgatcgagctggaccctacccagcacttcaccaagccgccg
gcccgttactcggaagccagcctggtgaaagagatggaaaaacgcggtatcggtcgcccg
tcgacctacgcggccatcatctccaccatccaggaccgcggctacgtggccctgcacaac
cgtcgtttctactccgagaagatgggtgacattgtcaccgaacgcctgtcggagagcttc
tcgaacctcatggactatggcttcaccgccggcatggaggagaacctcgacgacgtggcc
cagggtgagcgcgactggaagaacgtgctggatgagttctacggcgacttcaagaacaag
ctggaagtggctggctcggccgacagcggcatgcgcgccaaccagccgacgccgaccgac
atcacctgccgcgaatgcggccggcacatgatgatccgtaccgcatccaccggtgttttc
ctgggctgctcgggttacagcctgccgccgaaagaacgctgcaaggccaccatcaacctg
gtgccgggcgacgagatcgccgccgacgacgagggtgaatccgagtcgctggtgctgcgt
ggcaagcaccgctgcccgatctgtgccaccgccatggatgcttacctgctggatgaaaag
cgcaagctgcacatctgcggtaacaacccggattgcgtgggttacgagatcgaggaaggc
aactaccgcatcaagggctatgaaggtcctagcctggagtgcgacaagtgcggcagcgaa
atgcagctcaagactggccgtttcggcaagttcttcgggtgcaccaaccccgactgcaag
aacacccgcaagctgctcaagagcggcgaggcggcgccgccgaagatggacgcggtgaag
atgccggagctcaagtgcgagaaggtcaacgacacgtacgtgctgcgtgacggtgcctcg
gggttgttcctggccgccagccagttcccgaaaaaccgggagacccgtgcgcccctggtg
atcgagatcatcccgcacaaggacgagatcgaccccaagtaccacttcctctgcgaagcg
ccgaagaaggacccggacggtcgcccggccgtgattcgctacagccgcaagaccaaggag
cagtacgtgcagaccgaagtcgacggcaagccgaccggctggcgcgcgttctacgacggt
gatagctggaaggtcgaggacaagcgggccaaggaaaaagagccggcctga
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