Pseudomonas eucalypticola: HWQ56_10060
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Entry
HWQ56_10060 CDS
T07251
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pez
Pseudomonas eucalypticola
Pathway
pez03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HWQ56_10060 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pez03400
]
HWQ56_10060 (mfd)
Enzymes [BR:
pez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HWQ56_10060 (mfd)
DNA repair and recombination proteins [BR:
pez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HWQ56_10060 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QKZ04108
UniProt:
A0A7D5HMY9
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All DBs
Position
complement(2179986..2183435)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLSPTAGKHTWGNLPGAALSLAIAEAASAARRFTLLLTADSQSADRLEQELRF
FAPQLPVLHFPDWETLPYDLFSPHQDIISQRISSLYRLPELDHGVLVVPITTALHRLAPT
QFLLGSSLVLDVGQKLDVEQMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPETQRSIDKVDSVRLLPAREFPLQKDAVTRFKARFRERFDVDFR
RTPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRIDKQRPLLPPAELFLPVEDCFARLKQWPRVVASQADIEPGVGRDRFPAQPLPNL
AIEAKANQPLAALSNFLDQFPGRVLFTAESAGRREVLLELLGRLKLQPKTLDSWTDFATG
KDRLAITIAPLDEGLVLDDPALALVAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEVDNQVAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPTVDYATFSAGFP
FEETPDQQSAIEAVREDMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVRVEVMSRFKSAKEVSAAVQELADGKIDIVIGTHKLLQDDV
KVKNLGLVIIDEEHRFGVRQKEQLKNLRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASAVDEDGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAETLGIKKV
DAGPQGGRIEFAAETPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERADERFNTLEAL
FERLAPKAS
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgtcctgcgtcttccgctactgtcccccaccgcggggaaacacacctggggcaac
ctgcctggggccgccctgagcctggccatcgccgaggcagccagtgccgcccggcgtttc
accctgctgctcacggccgacagccagagtgccgaccgcctggaacaggagctgcgcttt
ttcgcgccgcaactgcccgtgctgcattttccggactgggaaaccctgccgtacgacctg
ttctcgccgcaccaggacatcatttcccagcgcatttccagcctgtaccgcctgccggag
ctggatcacggcgttctggtagtgcctatcaccacggccctacacaggttggcgcccacg
cagtttctgctgggcagcagtctggtgctggacgtgggccagaagctcgacgtggagcag
atgcgcacgcgcctggaagccagcggctaccgctacgtggacaccgtgtacgagcacggc
gaattcaccgtgcgcggcgcgctgatcgacctgttccccatgggcagcaagctgccctac
cgcatcgacctgttcgatgacgaaatcgagaccctgcgcaccttcgacccggagacccag
cggtccatcgacaaggtcgactcggtacgcctgctgcccgcgcgcgagttccccctgcag
aaggacgccgtcacccgcttcaaggcgcgctttcgcgaacgcttcgacgtggacttccgc
cgcacgccgatcttccaggacctgagcagcggtatcacccccgccggcatcgagtactac
ctgccgctgttcttcgaagaaacctccaccctgttcgactacctgccccaggacacccag
gtgttctcgctgccgggcatcgaacaggcggcggagaatttctggaacgacgtgcgcaac
cgctacgaagagcgccgcatcgacaagcagcggccgctgctgccgcctgccgaactgttc
ctgccggtggaggactgcttcgcacggctcaagcaatggccgcgtgtggtcgccagccag
gccgacatcgaaccgggcgtgggccgtgatcggttcccggcacagccgctgcccaacctg
gccatcgaagccaaggccaaccagccgctggcggcgctgtcgaatttcctcgaccagttc
cccggccgcgtgctgttcaccgccgaatcggcgggccgccgcgaggtgctgctggaactg
ctgggccgcctgaaactgcaacccaagaccctggacagctggaccgacttcgccaccggc
aaggaccgcctggccatcaccatcgccccgctggacgagggcctggtactggacgacccg
gccttggcgctggtcgccgaaagcccgctgttcggccagcgggtgatgcagcgccggcgc
cgcgaaaagcgcgccgacgccaacaacgatgcagtcatcaagaacctcaccgagctgcgc
gaaggcgcgcccgtggtgcacatcgaccacggcgtgggccgctacctggggctggcgacc
ctggaggtggacaaccaggtggccgaattcctcaccctggaatacgccgagaacgccaag
ctctacgtgccggtggccaacctgcacctgatcgcccgctataccggcagtgacgacgcc
ctggcgccgctgcaccgcctgggttcggaaacctggcagaaagccaagcgcaaggccgcc
gaacaggtgcgcgacgtggccgccgaactgctggacatctacgcccggcgtgcggcacgc
aaaggctacgccttcgccgacccgaccgtggattacgccaccttcagtgccggctttccg
ttcgaggaaacccccgaccagcaatcggccatcgaggcggtgcgcgaggacatgctcgcg
cccaagcccatggaccgcctggtgtgcggcgacgtcggcttcggcaagaccgaggtggcc
atgcgcgcggcgttcatcgccgtgcacggcggccgccaggtcgcgatcctggtgcccacc
accctgctcgcccagcaacactacaacagcttccgcgaccgcttcgccgactggcccgtg
cgggtcgaagtgatgagccgcttcaagtcggccaaggaagtcagcgctgccgtgcaggaa
ctggccgacggcaagatcgacatcgtcatcggcacccacaagctgctgcaggacgacgtc
aaggtcaagaacctgggcctggtgatcatcgacgaggaacaccgcttcggcgtgcgccag
aaagagcagctcaagaacctgcgcagcgaagtggacatcctcaccctgaccgccacgcct
atcccgcgtaccttgaacatggccgtgtcgggcatgcgcgacctgtccatcatcgccacc
ccgccggcgcggcgcctgtcggtgcggacgttcgtcatggagcagaacaagagcaccgtc
aaggaagcgctgctgcgtgagctgttgcgcggcggccaggtgtactacctgcacaacgac
gtgaagaccatcgagaagtgcgccgccgacctcgccgaactggtgcccgaggcccgcatc
ggcattggccacgggcagatgcgcgagcgcgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccc
agtgccaacaccatcatcatcgagcgggccgacaagttcggcctggcgcagttgcaccaa
ttgcgtggccgcgtggggcgcagccaccaccaggcctacgcctacctgctgaccccgccc
cgccagcagattaccccggacgccgaaaaacgcctggaagccatcgccaatacccaggac
ctgggcgccggcttcgtgctggccaccaacgacctggaaatccgtggcgccggcgagctg
ctgggcgaaggccagagcggccagatccaggccgtgggcttcaccctgtacatggaaatg
ctcgaacgcgccgtgaaggccattcgcaagggcgaacagcccaacctcgaccagccgctg
ggcggcggcccggagatcaacctgcgcctgccggcgttgatccccgaagactacctgccc
gatgtgcatgcacggctgatcctgtacaaacgcatcgcttcggcggtggacgaagacggc
ctcaaggacctgcaggtggaaatgatcgaccgcttcggcctgctgcccgagccgaccaag
aacctggtacgcctgacgctgctcaagctgcaggccgagaccctgggcatcaagaaggtg
gacgccggcccgcaaggcgggcgtatcgagttcgccgccgagaccccggtagacccgctg
gtgctgatcaagctgatccagggccagcccaaccgctacaaattcgaaggcgccacgctg
ttcaaattcatggtgccgatggaacgtgccgacgagcgcttcaacaccctcgaagcgctg
ttcgaacgcctggcgccgaaggcctcatga
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