Pseudomonas fakonensis: KSS94_08535
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Entry
KSS94_08535 CDS
T07698
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pfak
Pseudomonas fakonensis
Brite
KEGG Orthology (KO) [BR:
pfak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfak03032
]
KSS94_08535 (topA)
03400 DNA repair and recombination proteins [BR:
pfak03400
]
KSS94_08535 (topA)
Enzymes [BR:
pfak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KSS94_08535 (topA)
DNA replication proteins [BR:
pfak03032
]
Prokaryotic type
DNA Topoisomerases
KSS94_08535 (topA)
DNA repair and recombination proteins [BR:
pfak03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KSS94_08535 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QXH53148
LinkDB
All DBs
Position
1891696..1894305
Genome browser
AA seq
869 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGSQYVVKSSIGHIRDLPTSGSASASKEPAAKRSKAAAEA
PALSPKEKARRTLVARMGVDPEAGWKAKYEILPGKEKVIDELRRLAKDADTIYLATDLDR
EGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDRV
VGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKNAKV
RFEVARENGEAFKPLNQAQAMAALEKLKSSSYTISKREDRPTSSKPSAPFITSTLQQAAS
NRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVEMARSYIEKEFGKQYLPAAPIV
YGSKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSVT
VVAGDYELRAKGRILKFDGYTRVLPQQSKPGEDDVLPEMAQGEVLKLIQLDPSQHFTKPP
ARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESF
ANLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTAESAENGMRANQPTPTN
IACKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVLR
GKHRCPICATAMDAYLLDEKRKLHICGNNPDCVGYEIEEGNYRIKGYEGPSLECDKCGSE
MQLKTGRFGKFFGCTNPACKNTRKLLKSGEAAPPKMDKVDMPELKCEKVDDTYVLRDGAS
GLFLAASQFPKNRETRAPLVLEIVPHKHEIDPKYHFLCDAPQKDPDGRPTVIRYSRKTKE
QYVQSEVDGKPTGWKAFYDGGKWKVEDKR
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggccaaggccaagaccatcaacaagtac
ctgggcagccagtacgtggtgaagtcgagtatcggccacatccgtgacctccccaccagc
ggttctgccagcgcgagcaaggaaccggcggccaagcgcagcaaggctgcggccgaggct
ccggcgctgtcgccgaaggagaaggctcgccgcacgctggtggctcgcatgggcgtcgac
cccgaagccggctggaaagccaagtacgagatccttcccggcaaggagaaggtgatcgac
gagctgcgccgcctggccaaggacgccgacaccatctatctcgcaaccgacttggatcgc
gagggggaagccattgcctggcacctgcgcgaagccattggcggtgacgacagccgttac
aagcgcgtggtgttcaacgaaatcaccaaaaaagccatccaggaagcgttctcgcagcct
ggcgagctggatatcgaccgggtcaatgcccagcaagcgcgccgtttcctcgaccgcgtg
gtgggctacatggtttcgccgctgctgtgggccaagatcgcccgtggcctgtctgccggc
cgcgtgcagtcggtggcggtcaagctggtggtggagcgcgagcgtgaaatccgcgccttc
aaccccgaggaatattgggaagtccacgccgacctgggcaccgccaagaacgccaaggtg
cgttttgaagtggcgcgcgagaacggcgaggcgttcaagccgctgaaccaggctcaggcc
atggctgcgctggagaagctcaagtcctccagctacaccatcagcaagcgcgaagaccgc
ccgaccagcagcaagccgtcggcacccttcatcacctccaccctgcagcaggccgcgagc
aaccgcctgggcttcggggtgaagaagaccatgatgatggcccagcgtctgtacgaagcc
ggctacatcacttacatgcgtaccgactcgaccaacctgtcgcaggatgccgtggaaatg
gcgcgcagctacatcgagaaggagttcggcaagcagtatctgccggctgcgccgatcgtg
tacggcagcaaggaaggcgcccaggaagcgcacgaggcgattcgcccgtccgacgtcaac
acccacccgaccaagctcagcggcatggagcgtgatgccgagcgcctgtacgagctgatc
tggcgccagttcctggcctgccagatgccgccggcgcaatacctgtccaccagcgtcacc
gtggtggcgggcgactacgagctgcgcgccaagggccgcatcctcaagttcgacggttac
acccgtgtgctgccacagcagagcaagcccggcgaagatgacgtgctgccggaaatggcc
cagggcgaagtgctcaagctgatccagctcgacccgagccagcacttcaccaagccgccg
gcgcgctttaccgaagcgagcctggtcaaggagatggaaaagcgcggcatcggccgcccg
tccacctacgcggcgatcatttccaccattcaggaccgcggttatgtgaccttgcacaac
cgccgcttctactccgaaaaaatgggcgacatcgtcaccgagcgcctgtcggagagcttc
gccaacctgatggactacggcttcaccgccggcatggaagaaaacctcgacgacgtggcc
cagggcgagcgtgactggaagaacgtgctcgacgagttctacggtgacttcagcaagaag
ctgcagaccgccgagtccgctgaaaacggcatgcgcgccaaccagccgaccccgaccaac
atcgcctgcaaggaatgtggccggccgatgatgatccgcaccgcctccaccggcgtgttc
ctcggttgctcgggctacagcctgccaccgaaggagcgttgcaaggctacggtgaacctg
gtgccgggcgacgaaatcgccgctgacgacgagggcgagtccgagtcgctggtgctgcgc
ggcaagcaccgctgcccgatctgcgccaccgccatggacgcctacctgctggatgagaag
cgcaagctgcacatctgcggtaacaacccggattgcgttggctacgagatcgaagagggc
aactaccgcatcaagggctacgaagggccgagccttgagtgcgacaagtgcggcagcgaa
atgcagctcaagaccggccgcttcggcaagttcttcggttgcaccaaccctgcgtgcaag
aacacccgcaagctgctcaaaagcggcgaggcagcgccaccgaagatggacaaggtggac
atgcccgagctcaagtgcgagaaggtcgacgacacctacgtgctgcgtgacggtgcttcg
ggcctgttcctggctgccagccagttcccgaaaaaccgcgagacccgcgcgccgctggtg
ctcgagatcgtgccgcacaagcatgagatcgacccgaagtaccacttcctctgcgacgcc
ccgcagaaggacccggatggccgcccgacggtgattcgctatagccgcaagaccaaggag
cagtacgtgcagtccgaggtcgatggcaagccgactggctggaaggcgttctacgacggt
ggcaagtggaaggttgaagacaagcgctga
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